Probe-level measurement error improves accuracy in detecting differential gene expression.
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nuID: a universal naming scheme of oligonucleotides for illumina, affymetrix, and other microarraysEffect of Dietary Restriction and Subsequent Re-Alimentation on the Transcriptional Profile of Bovine Skeletal MuscleEnergy-sensing factors coactivator peroxisome proliferator-activated receptor γ coactivator 1-α (PGC-1α) and AMP-activated protein kinase control expression of inflammatory mediators in liver: induction of interleukin 1 receptor antagonistRNA microarray analysis in prenatal mouse cochlea reveals novel IGF-I target genes: implication of MEF2 and FOXM1 transcription factors.Biological assessment of robust noise models in microarray data analysis.RepExplore: addressing technical replicate variance in proteomics and metabolomics data analysis.A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability.Modeling Exon-Specific Bias Distribution Improves the Analysis of RNA-Seq DataA comprehensive re-analysis of the Golden Spike data: towards a benchmark for differential expression methods.Global gene expression in endometrium of high and low fertility heifers during the mid-luteal phase of the estrous cycle.Including probe-level uncertainty in model-based gene expression clustering.Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays.Empirical Bayes models for multiple probe type microarrays at the probe levelRanking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity.puma: a Bioconductor package for propagating uncertainty in microarray analysis.Expulsion of Trichuris muris is associated with increased expression of angiogenin 4 in the gut and increased acidity of mucins within the goblet cell.The impact of measurement errors in the identification of regulatory networksA comparison of probe-level and probeset models for small-sample gene expression dataGenotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background.The centrosomal OFD1 protein interacts with the translation machinery and regulates the synthesis of specific targets.Effect of dietary restriction and subsequent re-alimentation on the transcriptional profile of bovine ruminal epithelium.Systematical detection of significant genes in microarray data by incorporating gene interaction relationship in biological systems.A systems biology analysis of brain microvascular endothelial cell lipotoxicityIdentifying differentially expressed transcripts from RNA-seq data with biological variation.Assessing numerical dependence in gene expression summaries with the jackknife expression difference.Negative energy balance and hepatic gene expression patterns in high-yielding dairy cows during the early postpartum period: a global approach.Unravelling the enigma of selective vulnerability in neurodegeneration: motor neurons resistant to degeneration in ALS show distinct gene expression characteristics and decreased susceptibility to excitotoxicity.puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis.A note on an exon-based strategy to identify differentially expressed genes in RNA-seq experiments.Improving RNA-Seq expression estimation by modeling isoform- and exon-specific read sequencing rateEffect of dietary restriction and subsequent re-alimentation on the transcriptional profile of hepatic tissue in cattle.The plasma membrane calcium ATPase 4 signalling in cardiac fibroblasts mediates cardiomyocyte hypertrophyPleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: repercussions for innate and adaptive immunity.Gene expression profiling in human neurodegenerative disease.Invited review: decoding the pathophysiological mechanisms that underlie RNA dysregulation in neurodegenerative disorders: a review of the current state of the art.Pulsatile exposure to simulated reflux leads to changes in gene expression in a 3D model of oesophageal mucosa.An enhanced quantile approach for assessing differential gene expressions.Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies.Effect of dietary n-3 polyunsaturated fatty acids on transcription factor regulation in the bovine endometrium.Microarray profiling reveals CXCR4a is downregulated by blood flow in vivo and mediates collateral formation in zebrafish embryos.
P2860
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P2860
Probe-level measurement error improves accuracy in detecting differential gene expression.
description
2006 nî lūn-bûn
@nan
2006年の論文
@ja
2006年学术文章
@wuu
2006年学术文章
@zh
2006年学术文章
@zh-cn
2006年学术文章
@zh-hans
2006年学术文章
@zh-my
2006年学术文章
@zh-sg
2006年學術文章
@yue
2006年學術文章
@zh-hant
name
Probe-level measurement error ...... differential gene expression.
@en
Probe-level measurement error ...... differential gene expression.
@nl
type
label
Probe-level measurement error ...... differential gene expression.
@en
Probe-level measurement error ...... differential gene expression.
@nl
prefLabel
Probe-level measurement error ...... differential gene expression.
@en
Probe-level measurement error ...... differential gene expression.
@nl
P2860
P356
P1433
P1476
Probe-level measurement error ...... differential gene expression.
@en
P2093
Marta Milo
Xuejun Liu
P2860
P304
P356
10.1093/BIOINFORMATICS/BTL361
P407
P577
2006-07-04T00:00:00Z