about
In Vivo and in Vitro Proteome Analysis of Human Immunodeficiency Virus (HIV)-1-infected, Human CD4+ T Cells.Building high-quality assay libraries for targeted analysis of SWATH MS data.Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass SpectrometrymapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometryUse of SELDI MS to discover and identify potential biomarkers of toxicity in InnoMed PredTox: a multi-site, multi-compound study.Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.Serum proteomic profiling reveals that pretreatment complement protein levels are predictive of esophageal cancer patient response to neoadjuvant chemoradiation.Development of a pharmaceutical hepatotoxicity biomarker panel using a discovery to targeted proteomics approach.Use of proteomics for the discovery of early markers of drug toxicity.Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system.A repository of assays to quantify 10,000 human proteins by SWATH-MS.Quantitative variability of 342 plasma proteins in a human twin population.Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation.Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS.TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomicsMass spectrometric protein maps for biomarker discovery and clinical research.Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry.Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry.Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses.Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis.Quantitative proteomics: challenges and opportunities in basic and applied research.Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survivalRange of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate.Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps.Sequence tagging reveals unexpected modifications in toxicoproteomics.Elucidation of host-pathogen protein-protein interactions to uncover mechanisms of host cell rewiring.Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis.Absolute quantification of toxicological biomarkers by multiple reaction monitoring.Differential proteomics incorporating iTRAQ labeling and multi-dimensional separations.OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.Systems proteomics approaches to study bacterial pathogens: application to Mycobacterium tuberculosis.AP-SWATH reveals direct involvement of VCP/p97 in integrated stress response signaling through facilitating CReP/PPP1R15B degradation.Proteomics goes parallelData-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorialComplex-centric proteome profiling by SEC-SWATH-MSComplex-centric proteome profiling by SEC-SWATH-MSComparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.Applications and Developments in Targeted Proteomics: From SRM to DIA/SWATH
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description
hulumtues
@sq
researcher
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wetenschapper
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հետազոտող
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name
Ben C Collins
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Ben C Collins
@en
Ben C Collins
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Ben C Collins
@nl
Ben C Collins
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type
label
Ben C Collins
@ast
Ben C Collins
@en
Ben C Collins
@es
Ben C Collins
@nl
Ben C Collins
@sl
prefLabel
Ben C Collins
@ast
Ben C Collins
@en
Ben C Collins
@es
Ben C Collins
@nl
Ben C Collins
@sl
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P21
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0000-0003-0827-3495