Anisotropic network model: systematic evaluation and a new web interface.
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Complete mapping of substrate translocation highlights the role of LeuT N-terminal segment in regulating transport cycleStructure and flexibility of the C-ring in the electromotor of rotary F(0)F(1)-ATPase of pea chloroplastsChanges in dynamics upon oligomerization regulate substrate binding and allostery in amino acid kinase family membersEnsemble Refinement of Protein Crystal Structures: Validation and ApplicationThe N Domain of Human Angiotensin-I-converting Enzyme: THE ROLE OF N-GLYCOSYLATION AND THE CRYSTAL STRUCTURE IN COMPLEX WITH AN N DOMAIN-SPECIFIC PHOSPHINIC INHIBITOR, RXP407Comparative Dynamics of NMDA- and AMPA-Glutamate Receptor N-Terminal DomainsIn situ structural analysis of the Yersinia enterocolitica injectisomeA Conformational Intermediate in Glutamate Receptor ActivationComparative Normal Mode Analysis of the Dynamics of DENV and ZIKV CapsidsProbing the flexibility of large conformational changes in protein structures through local perturbationsMolecular Determinants Underlying Binding Specificities of the ABL Kinase Inhibitors: Combining Alanine Scanning of Binding Hot Spots with Network Analysis of Residue Interactions and CoevolutionHow Intrinsic Molecular Dynamics Control Intramolecular Communication in Signal Transducers and Activators of Transcription Factor STAT5Structural Consequences of Chromophore Formation and Exploration of Conserved Lid Residues amongst Naturally Occurring Fluorescent ProteinsStructural features of cholesteryl ester transfer protein: a molecular dynamics simulation studyDifferential modulation of functional dynamics and allosteric interactions in the Hsp90-cochaperone complexes with p23 and Aha1: a computational study.Identifying essential pairwise interactions in elastic network model using the alpha shape theory.Characterizing of functional human coding RNA editing from evolutionary, structural, and dynamic perspectives.Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin IICASP11 refinement experiments with ROSETTA.Comparison of the Internal Dynamics of Metalloproteases Provides New Insights on Their Function and Evolution.The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor bindingIncorporating modeling and simulations in undergraduate biophysical chemistry course to promote understanding of structure-dynamics-function relationships in proteins.Optimal modeling of atomic fluctuations in protein crystal structures for weak crystal contact interactions.Structural mutation analysis of PTEN and its genotype-phenotype correlations in endometriosis and cancerMolecular dynamics simulations and modelling of the residue interaction networks in the BRAF kinase complexes with small molecule inhibitors: probing the allosteric effects of ligand-induced kinase dimerization and paradoxical activation.Wordom: a user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces.An analysis of the influence of protein intrinsic dynamical properties on its thermal unfolding behavior.Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteinsAll-atom modeling of anisotropic atomic fluctuations in protein crystal structures.Elastic network normal modes provide a basis for protein structure refinementApplication of elastic network models to proteins in the crystalline state.Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics.A force field for virtual atom molecular mechanics of proteinsConstraint-based, homology model of the extracellular domain of the epithelial Na+ channel α subunit reveals a mechanism of channel activation by proteases.Remote exosites of the catalytic domain of matrix metalloproteinase-12 enhance elastin degradation.Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods.Single-molecule analysis reveals human UV-damaged DNA-binding protein (UV-DDB) dimerizes on DNA via multiple kinetic intermediates.Integrating protein structural dynamics and evolutionary analysis with Bio3D.WEBnm@ v2.0: Web server and services for comparing protein flexibilityProtein structural variation in computational models and crystallographic data.
P2860
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P2860
Anisotropic network model: systematic evaluation and a new web interface.
description
2006 nî lūn-bûn
@nan
2006年の論文
@ja
2006年学术文章
@wuu
2006年学术文章
@zh
2006年学术文章
@zh-cn
2006年学术文章
@zh-hans
2006年学术文章
@zh-my
2006年学术文章
@zh-sg
2006年學術文章
@yue
2006年學術文章
@zh-hant
name
Anisotropic network model: systematic evaluation and a new web interface.
@en
Anisotropic network model: systematic evaluation and a new web interface.
@nl
type
label
Anisotropic network model: systematic evaluation and a new web interface.
@en
Anisotropic network model: systematic evaluation and a new web interface.
@nl
prefLabel
Anisotropic network model: systematic evaluation and a new web interface.
@en
Anisotropic network model: systematic evaluation and a new web interface.
@nl
P2093
P2860
P356
P1433
P1476
Anisotropic network model: systematic evaluation and a new web interface.
@en
P2093
Ivet Bahar
Lee-Wei Yang
P2860
P304
P356
10.1093/BIOINFORMATICS/BTL448
P407
P577
2006-08-23T00:00:00Z