Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets.
about
Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matterDNA Methylation Signatures of the Plant ChromomethyltransferasesArabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing dataThe Arabidopsis Information Resource (TAIR): improved gene annotation and new toolsThe Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatinAnalysis of the transcriptome of adult Dictyocaulus filaria and comparison with Dictyocaulus viviparus, with a focus on molecules involved in host-parasite interactions.Considering transposable element diversification in de novo annotation approaches.Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thalianaNovel transposable elements from Anopheles gambiae.A beginner's guide to eukaryotic genome annotation.Transposon variants and their effects on gene expression in ArabidopsisExtensive natural epigenetic variation at a de novo originated gene.Exploration of plant genomes in the FLAGdb++ environment.TE-Tracker: systematic identification of transposition events through whole-genome resequencingGenome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis.Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes.Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana.Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools.A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong SyntenyMobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor.Repeat elements and the Arabidopsis DNA methylation landscape.In vivo mapping of arabidopsis scaffold/matrix attachment regions reveals link to nucleosome-disfavoring poly(dA:dT) tracts.Genetic and epigenetic variation of transposable elements in Arabidopsis.Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsis thaliana.Extensive demethylation of repetitive elements during seed development underlies gene imprinting.Discovery of novel genes derived from transposable elements using integrative genomic analysis.Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin.Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions.
P2860
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P2860
Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets.
description
2008 nî lūn-bûn
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2008年の論文
@ja
2008年学术文章
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2008年学术文章
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2008年学术文章
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2008年学术文章
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2008年学术文章
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2008年学术文章
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name
Improved detection and annotat ...... tiple reference sequence sets.
@en
Improved detection and annotat ...... tiple reference sequence sets.
@nl
type
label
Improved detection and annotat ...... tiple reference sequence sets.
@en
Improved detection and annotat ...... tiple reference sequence sets.
@nl
prefLabel
Improved detection and annotat ...... tiple reference sequence sets.
@en
Improved detection and annotat ...... tiple reference sequence sets.
@nl
P2093
P1433
P1476
Improved detection and annotat ...... tiple reference sequence sets.
@en
P2093
Hadi Quesneville
Nicolas Buisine
Vincent Colot
P304
P356
10.1016/J.YGENO.2008.01.005
P577
2008-03-14T00:00:00Z