Coexpression-based clustering of Arabidopsis root genes predicts functional modules in early phosphate deficiency signaling.
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Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphereMitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition PhasesRe-analysis of RNA-seq transcriptome data reveals new aspects of gene activity in Arabidopsis root hairsComparative expression profiling reveals a role of the root apoplast in local phosphate responseSystems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments.Genome-wide co-expression analysis predicts protein kinases as important regulators of phosphate deficiency-induced root hair remodeling in Arabidopsis.Transcriptome divergence between introduced and native populations of Canada thistle, Cirsium arvense.Positional signaling and expression of ENHANCER OF TRY AND CPC1 are tuned to increase root hair density in response to phosphate deficiency in Arabidopsis thaliana.Expression changes of ribosomal proteins in phosphate- and iron-deficient Arabidopsis roots predict stress-specific alterations in ribosome composition.A genome-wide longitudinal transcriptome analysis of the aging model Podospora anserina.Soybean kinome: functional classification and gene expression patternsClustering and Differential Alignment Algorithm: Identification of Early Stage Regulators in the Arabidopsis thaliana Iron Deficiency ResponseGenome-wide analysis of overlapping genes regulated by iron deficiency and phosphate starvation reveals new interactions in Arabidopsis roots.The paralogous R3 MYB proteins CAPRICE, TRIPTYCHON and ENHANCER OF TRY AND CPC1 play pleiotropic and partly non-redundant roles in the phosphate starvation response of Arabidopsis roots.The histone deacetylase HDA19 controls root cell elongation and modulates a subset of phosphate starvation responses in ArabidopsisSkewing in Arabidopsis roots involves disparate environmental signaling pathways.Complementary proteome and transcriptome profiling in phosphate-deficient Arabidopsis roots reveals multiple levels of gene regulation.Discriminative gene co-expression network analysis uncovers novel modules involved in the formation of phosphate deficiency-induced root hairs in Arabidopsis.Mapping gene activity of Arabidopsis root hairsThe transcriptional response of Arabidopsis leaves to Fe deficiency.Systems-wide analysis of manganese deficiency-induced changes in gene activity of Arabidopsis roots.Towards a comprehensive picture of the genetic landscape of complex traits.The Understanding of the Plant Iron Deficiency Responses in Strategy I Plants and the Role of Ethylene in This Process by Omic ApproachesProteomics of phosphate use and deprivation in plants.Molecular mechanisms underlying phosphate sensing, signaling, and adaptation in plants.Integration of transcriptomic and proteomic analysis towards understanding the systems biology of root hairs.Vascular-mediated signalling involved in early phosphate stress response in plants.Unique drought resistance functions of the highly ABA-induced clade A protein phosphatase 2Cs.Divergent low water potential response in Arabidopsis thaliana accessions Landsberg erecta and Shahdara.A digital compendium of genes mediating the reversible phosphorylation of proteins in fe-deficient Arabidopsis roots.Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis.ALFIN-LIKE 6 is involved in root hair elongation during phosphate deficiency in Arabidopsis.Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.Exposure of barley plants to low Pi leads to rapid changes in root respiration that correlate with specific alterations in amino acid substrates.The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.The Deubiquitinase OTU5 Regulates Root Responses to Phosphate Starvation.Comparative transcriptome analysis of nodules of two Mesorhizobium-chickpea associations with differential symbiotic efficiency under phosphate deficiency.Melonet-DB, a Grand RNA-Seq Gene Expression Atlas in Melon (Cucumis melo L.).The WUSCHEL-related homeobox 5a (PtoWOX5a) is involved in adventitious root development in poplar.Mutually exclusive alterations in secondary metabolism are critical for the uptake of insoluble iron compounds by Arabidopsis and Medicago truncatula.
P2860
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P2860
Coexpression-based clustering of Arabidopsis root genes predicts functional modules in early phosphate deficiency signaling.
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年学术文章
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2011年学术文章
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2011年学术文章
@zh-cn
2011年学术文章
@zh-hans
2011年学术文章
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2011年学术文章
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2011年學術文章
@zh-hant
name
Coexpression-based clustering ...... hosphate deficiency signaling.
@en
Coexpression-based clustering ...... hosphate deficiency signaling.
@nl
type
label
Coexpression-based clustering ...... hosphate deficiency signaling.
@en
Coexpression-based clustering ...... hosphate deficiency signaling.
@nl
prefLabel
Coexpression-based clustering ...... hosphate deficiency signaling.
@en
Coexpression-based clustering ...... hosphate deficiency signaling.
@nl
P2093
P2860
P356
P1433
P1476
Coexpression-based clustering ...... hosphate deficiency signaling.
@en
P2093
Chao-Yu Pan
Thomas J Buckhout
Thomas J W Yang
Wen-Dar Lin
Wolfgang Schmidt
Ya-Yun Liao
P2860
P304
P356
10.1104/PP.110.166520
P407
P577
2011-01-19T00:00:00Z