Accounting for background nucleotide composition when measuring codon usage bias.
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A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolutionComparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthusLarge-scale genomic analysis of codon usage in dengue virus and evaluation of its phylogenetic dependenceRelative codon adaptation: a generic codon bias index for prediction of gene expression.Comparison of codon usage measures and their applicability in prediction of microbial gene expressivityDetecting positive and purifying selection at synonymous sites in yeast and wormEnergy efficiency trade-offs drive nucleotide usage in transcribed regionsLinking genomics and ecology to investigate the complex evolution of an invasive Drosophila pestOrthologous genes identified by transcriptome sequencing in the spider genus StegodyphusGenomic, Transcriptomic and Proteomic Analysis Provide Insights into the Cold Adaptation Mechanism of the Obligate Psychrophilic Fungus Mrakia psychrophilaCompact genome of the Antarctic midge is likely an adaptation to an extreme environmentOrigin of the 1918 pandemic H1N1 influenza A virus as studied by codon usage patterns and phylogenetic analysis.Large genomic differences between the morphologically indistinguishable diplomonads Spironucleus barkhanus and Spironucleus salmonicida.Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions.The impact of RNA structure on coding sequence evolution in both bacteria and eukaryotes.Balanced codon usage optimizes eukaryotic translational efficiency.Rapid divergence of codon usage patterns within the rice genome.Positive selection for unpreferred codon usage in eukaryotic genomes.General rules for optimal codon choice.The systemic imprint of growth and its uses in ecological (meta)genomics.Quantification of codon selection for comparative bacterial genomicsOptimal codon identities in bacteria: implications from the conflicting results of two different methods.Positive selection drives faster-Z evolution in silkmothsRates of evolution in stress-related genes are associated with habitat preference in two Cardamine lineages.Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage.Predicting protein-ATP binding sites from primary sequence through fusing bi-profile sampling of multi-view features.Discovery and genomic characterization of a novel bat sapovirus with unusual genomic features and phylogenetic position.Genome-wide patterns of codon bias are shaped by natural selection in the purple sea urchin, Strongylocentrotus purpuratusMissing genes, multiple ORFs, and C-to-U type RNA editing in Acrasis kona (Heterolobosea, Excavata) mitochondrial DNA.Systematic CpT (ApG) depletion and CpG excess are unique genomic signatures of large DNA viruses infecting invertebrates.On the limitations of using ribosomal genes as references for the study of codon usage: a rebuttal.SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage.Effective population size does not predict codon usage bias in mammalsTranslationally optimal codons associate with aggregation-prone sites in proteins.Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes.Causes and implications of codon usage bias in RNA viruses.Extensive gene amplification and concerted evolution within the CPR family of cuticular proteins in mosquitoes.Genome-wide patterns of genetic polymorphism and signatures of selection in Plasmodium vivax.Compare the differences of synonymous codon usage between the two species within cardiovirusSeforta, an integrated tool for detecting the signature of selection in coding sequences.
P2860
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P2860
Accounting for background nucleotide composition when measuring codon usage bias.
description
2002 nî lūn-bûn
@nan
2002年の論文
@ja
2002年学术文章
@wuu
2002年学术文章
@zh
2002年学术文章
@zh-cn
2002年学术文章
@zh-hans
2002年学术文章
@zh-my
2002年学术文章
@zh-sg
2002年學術文章
@yue
2002年學術文章
@zh-hant
name
Accounting for background nucleotide composition when measuring codon usage bias.
@en
Accounting for background nucleotide composition when measuring codon usage bias.
@nl
type
label
Accounting for background nucleotide composition when measuring codon usage bias.
@en
Accounting for background nucleotide composition when measuring codon usage bias.
@nl
prefLabel
Accounting for background nucleotide composition when measuring codon usage bias.
@en
Accounting for background nucleotide composition when measuring codon usage bias.
@nl
P2860
P1476
Accounting for background nucleotide composition when measuring codon usage bias.
@en
P2093
John A Novembre
P2860
P304
P356
10.1093/OXFORDJOURNALS.MOLBEV.A004201
P577
2002-08-01T00:00:00Z