Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.
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The Poisson-Boltzmann model for tRNA: Assessment of the calculation set-up and ionic concentration cutoffRecognition of the spliceosomal branch site RNA helix on the basis of surface and electrostatic featuresThe role of positively charged amino acids and electrostatic interactions in the complex of U1A protein and U1 hairpin II RNAUnderstanding nucleic acid-ion interactionsBiomolecular electrostatics and solvation: a computational perspectiveMapping metal-binding sites in the catalytic domain of bacterial RNase P RNANMR analysis of bovine tRNATrp: conformation dependence of Mg2+ binding.Folding of A+U-rich RNA elements modulates AUF1 binding. Potential roles in regulation of mRNA turnover.Counting the ions surrounding nucleic acids.Divalent ion competition reveals reorganization of an RNA ion atmosphere upon foldingDissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding.Probing counterion modulated repulsion and attraction between nucleic acid duplexes in solution.A thermodynamic framework for Mg2+ binding to RNA.The rate-limiting step in the folding of a large ribozyme without kinetic trapsNucleic acid helix stability: effects of salt concentration, cation valence and size, and chain lengthUse of terbium as a probe of tRNA tertiary structure and folding.Water counting: quantitating the hydration level of paramagnetic metal ions bound to nucleotides and nucleic acids.Effects of magnesium ions on the stabilization of RNA oligomers of defined structures.Deciphering the role of glucosamine-6-phosphate in the riboswitch action of glmS ribozymeCritical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble.Riboswitch conformations revealed by small-angle X-ray scattering.A quantitative Raman spectroscopic signal for metal-phosphodiester interactions in solutionA guide to ions and RNA structureRNA and its ionic cloud: solution scattering experiments and atomically detailed simulations.Formulation of a new and simple nonuniform size-modified Poisson-Boltzmann description.Structural metals in the group I intron: a ribozyme with a multiple metal ion core.Evidence for a thermodynamically distinct Mg2+ ion associated with formation of an RNA tertiary structureEffects of Mg2+ on the free energy landscape for folding a purine riboswitch RNA.Computational methods for biomolecular electrostatics.Electrostatic properties of cowpea chlorotic mottle virus and cucumber mosaic virus capsidsMonovalent and divalent promoted GAAA tetraloop-receptor tertiary interactions from freely diffusing single-molecule studies.Folding of a universal ribozyme: the ribonuclease P RNA.RNA folding: thermodynamic and molecular descriptions of the roles of ionsSingle-molecule kinetics reveal cation-promoted DNA duplex formation through ordering of single-stranded helicesCrowders perturb the entropy of RNA energy landscapes to favor folding.A repulsive field: advances in the electrostatics of the ion atmosphereDo conformational biases of simple helical junctions influence RNA folding stability and specificity?Molecular crowders and cosolutes promote folding cooperativity of RNA under physiological ionic conditions.Folding of RNA tertiary structure: Linkages between backbone phosphates, ions, and water.Single-molecule studies of riboswitch folding.
P2860
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P2860
Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.
description
2000 nî lūn-bûn
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2000年の論文
@ja
2000年学术文章
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2000年学术文章
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2000年学术文章
@zh-cn
2000年学术文章
@zh-hans
2000年学术文章
@zh-my
2000年学术文章
@zh-sg
2000年學術文章
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2000年學術文章
@zh-hant
name
Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.
@en
type
label
Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.
@en
prefLabel
Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.
@en
P356
P1476
Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.
@en
P2093
P304
P356
10.1006/JMBI.2000.3769
P407
P577
2000-06-01T00:00:00Z