about
Polymerization of chloro-p-xylylenes, quantum-chemical studyMultiple β-sheet molecular dynamics of amyloid formation from two ABl-SH3 domain peptides.Molecular dynamics study of amyloid formation of two Abl-SH3 domain peptides.Recent improvements in prediction of protein structure by global optimization of a potential energy function.The protein folding problem: global optimization of the force fields.Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMC.Improvement of the treatment of loop structures in the UNRES force field by inclusion of coupling between backbone- and side-chain-local conformational states.Modification and optimization of the united-residue (UNRES) potential energy function for canonical simulations. I. Temperature dependence of the effective energy function and tests of the optimization method with single training proteins.Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field.Dynamic Formation and Breaking of Disulfide Bonds in Molecular Dynamics Simulations with the UNRES Force Field.Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field.Solution conformational study of Scyliorhinin I analogues with conformational constraints by two-dimensional NMR and theoretical conformational analysis.Potential of mean force of association of large hydrophobic particles: toward the nanoscale limit.A method for optimizing potential-energy functions by a hierarchical design of the potential-energy landscape: application to the UNRES force field.Towards temperature-dependent coarse-grained potentials of side-chain interactions for protein folding simulations. I: molecular dynamics study of a pair of methane molecules in water at various temperatures.Folding kinetics of WW domains with the united residue force field for bridging microscopic motions and experimental measurements.Molecular simulation study of cooperativity in hydrophobic associationSimple physics-based analytical formulas for the potentials of mean force for the interaction of amino acid side chains in water. IV. Pairs of different hydrophobic side chainsDeltorphin analogs restricted via a urea bridge: structure and opioid activity.Implication of the disulfide bridge in trypsin inhibitor SFTI-1 in its interaction with serine proteinases.Conformation-activity relationships of cyclo-constrained mu/delta opioid agonists derived from the N-terminal tetrapeptide segment of dermorphin/deltorphin.Theoretical study of polymerization mechanism of p-xylylene based polymers.Conformation-activity relationships of cyclo-constrained micro/delta opioid agonists derived from the N-terminal tetrapeptide segment of dermorphin/deltorphin.Molecular dynamics study of a gelsolin-derived peptide binding to a lipid bilayer containing phosphatidylinositol 4,5-bisphosphate.Conformational studies of vasopressin and mesotocin using NMR spectroscopy and molecular modelling methods. Part II: Studies in the SDS micelle.Potential of mean force of hydrophobic association: dependence on solute size.Prediction of protein structure with the coarse-grained UNRES force field assisted by small X-ray scattering data and knowledge-based information.Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.Role of the sulfur to α-carbon thioether bridges in thurincin H.Impact of selected amino acids of HP0377 (Helicobacter pylori thiol oxidoreductase) on its functioning as a CcmG (cytochrome c maturation) protein and Dsb (disulfide bond) isomerase.Bladder cancer detection using a peptide substrate of the 20S proteasome.Molecular simulations of rhodopsin tetrameter.An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics.Temperature-dependent structure-property modeling of viscosity for ionic liquidsRapid communication: Computational simulation and analysis of a candidate for the design of a novel silk-based biopolymerBinding modes of a new epoxysuccinyl–peptide inhibitor of cysteine proteases. Where and how do cysteine proteases express their selectivity?Dynamics study on single and multiple β-sheetsSimple Physics-Based Analytical Formulas for the Potentials of Mean Force for the Interaction of Amino Acid Side Chains in Water. 3. Calculation and Parameterization of the Potentials of Mean Force of Pairs of Identical Hydrophobic Side Chains
P50
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P50
description
researcher
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wetenschapper
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հետազոտող
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name
Cezary Czaplewski
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Cezary Czaplewski
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Cezary Czaplewski
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Cezary Czaplewski
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Cezary Czaplewski
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Cezary Czaplewski
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type
label
Cezary Czaplewski
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Cezary Czaplewski
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Cezary Czaplewski
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Cezary Czaplewski
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Cezary Czaplewski
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Cezary Czaplewski
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Cezary Ryszard Czaplewski
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prefLabel
Cezary Czaplewski
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Cezary Czaplewski
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Cezary Czaplewski
@es
Cezary Czaplewski
@nl
Cezary Czaplewski
@pl
Cezary Czaplewski
@sl
P108
P106
P1153
7004461403
P1960
JAAjHL8AAAAJ
P2456
P31
P3124
P496
0000-0002-0294-3403