about
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequencesIntroducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communitiesMETAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data.A decade of irrigation transforms the soil microbiome of a semi-arid pine forest.Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices.Bacterial community structure and activity in different Cd-treated forest soils.Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling.Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands.Long-term warming alters the composition of Arctic soil microbial communities.Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma.Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets.Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests.Neutrophil elastase alters the murine gut microbiota resulting in enhanced Salmonella colonization.Isolation of a substantial proportion of forest soil bacterial communities detected via pyrotag sequencing.Temporal stability of the mouse gut microbiota in relation to innate and adaptive immunity.Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest.Resistance and resilience of the forest soil microbiome to logging-associated compactionTowards a unified paradigm for sequence-based identification of fungi.Distinct soil microbial diversity under long-term organic and conventional farmingVertical distribution of the soil microbiota along a successional gradient in a glacier forefield.A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts.Microbial diversity in European alpine permafrost and active layers.Networking in the Plant Microbiome.Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier.A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting.Temporal Dynamics of Soil Microbial Communities below the Seedbed under Two Contrasting Tillage RegimesSemi-automated genetic analyses of soil microbial communities: comparison of T-RFLP and RISA based on descriptive and discriminative statistical approaches.V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences.Ecology of Alpine Macrofungi - Combining Historical with Recent Data.Improved recovery of ancient DNA from subfossil wood - application to the world's oldest Late Glacial pine forest.Stable isotope probing implicates a species of Cortinarius in carbon transfer through ectomycorrhizal fungal mycelial networks in Arctic tundra.Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets.A novel strategy to extract specific phylogenetic sequence information from community T-RFLP.Positive diversity-functioning relationships in model communities of methanotrophic bacteria.Assessing effects of the entomopathogenic fungus Metarhizium brunneum on soil microbial communities in Agriotes spp. biological pest control.Residual polymerase activity-induced bias in terminal restriction fragment length polymorphism analysis.Ranking the magnitude of crop and farming system effects on soil microbial biomass and genetic structure of bacterial communities.Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker
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P50
description
onderzoeker
@nl
researcher
@en
հետազոտող
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name
Martin Hartmann
@ast
Martin Hartmann
@en
Martin Hartmann
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Martin Hartmann
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Martin Hartmann
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Martin Hartmann
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Martin Hartmann
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Martin Hartmann
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Hartmann M
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Martin Hartmann
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Martin Hartmann
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Martin Hartmann
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Martin Hartmann
@nl
P214
P106
P108
P1153
56914703000
P214
P31
P496
0000-0001-8069-5284
P734
P735
P7859
lccn-no2002085531