Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation
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OrthoMaM: a database of orthologous genomic markers for placental mammal phylogeneticsPhylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factorsThe nucleotide sequence of koala (Phascolarctos cinereus) retrovirus: a novel type C endogenous virus related to Gibbon ape leukemia virus.Position specific variation in the rate of evolution in transcription factor binding sitesAnalysis of among-site variation in substitution patternsGenome-wide identification of human functional DNA using a neutral indel modelA framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendlyNatural biocombinatorics in the polyketide synthase genes of the actinobacterium Streptomyces avermitilisComputational Performance and Statistical Accuracy of *BEAST and Comparisons with Other MethodsLong branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct modelBranch length estimation and divergence dating: estimates of error in Bayesian and maximum likelihood frameworksEvidence for positive selection in the C-terminal domain of the cholesterol metabolism gene PCSK9 based on phylogenetic analysis in 14 primate speciesAdaptive evolution of SCML1 in primates, a gene involved in male reproductionAssessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justifiedLikelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope geneStatistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites.Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) dataStatistical power of phylo-HMM for evolutionarily conserved element detection.Adaptive gene expression divergence inferred from population genomics.Rampant adaptive evolution in regions of proteins with unknown function in Drosophila simulans.Indel PDB: a database of structural insertions and deletions derived from sequence alignments of closely related proteins.Phylogenetic analysis of brine shrimp (Artemia) in China using DNA barcoding.Coevolution of interacting fertilization proteinsInference and characterization of horizontally transferred gene families using stochastic mappingDiversifying selection in human papillomavirus type 16 lineages based on complete genome analysesMeta-alignment with crumble and prune: partitioning very large alignment problems for performance and parallelizationEffects of character weighting and species sampling on phylogeny reconstruction: a case study based on DNA sequence data in cetaceansIncidence of male-killing Rickettsia spp. (alpha-proteobacteria) in the ten-spot ladybird beetle Adalia decempunctata L. (Coleoptera: Coccinellidae).Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: yeasts revisited.Diversity and evolution of the green fluorescent protein family.Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models.Advantages of a mechanistic codon substitution model for evolutionary analysis of protein-coding sequences.Noncoding sequences near duplicated genes evolve rapidly.History of infection with different male-killing bacteria in the two-spot ladybird beetle Adalia bipunctata revealed through mitochondrial DNA sequence analysis.A simulation approach for change-points on phylogenetic trees.Inferring explicit weighted consensus networks to represent alternative evolutionary histories.Natural polymorphisms and unusual mutations in HIV-1 protease with potential antiretroviral resistance: a bioinformatic analysis.Molecular evolution of a central region containing B cell epitopes in the gene encoding the p67 sporozoite antigen within a field population of Theileria parva.Comprehensive Characterization of the Transmitted/Founder env Genes From a Single MSM Cohort in China.Non-Markovian effects on protein sequence evolution due to site dependent substitution rates
P2860
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P2860
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation
description
article
@en
im März 1994 veröffentlichter wissenschaftlicher Artikel
@de
wetenschappelijk artikel
@nl
наукова стаття, опублікована в березні 1994
@uk
name
Comparison of models for nucle ...... lihood phylogenetic estimation
@en
Comparison of models for nucle ...... lihood phylogenetic estimation
@nl
type
label
Comparison of models for nucle ...... lihood phylogenetic estimation
@en
Comparison of models for nucle ...... lihood phylogenetic estimation
@nl
prefLabel
Comparison of models for nucle ...... lihood phylogenetic estimation
@en
Comparison of models for nucle ...... lihood phylogenetic estimation
@nl
P1476
Comparison of models for nucle ...... lihood phylogenetic estimation
@en
P304
P356
10.1093/OXFORDJOURNALS.MOLBEV.A040112
P407
P50
P577
1994-03-01T00:00:00Z