When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics
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A molecular phylogeny of Hemiptera inferred from mitochondrial genome sequencesResolving discrepancy between nucleotides and amino acids in deep-level arthropod phylogenomics: differentiating serine codons in 21-amino-acid modelsIncreased gene sampling strengthens support for higher-level groups within leaf-mining moths and relatives (Lepidoptera: Gracillariidae)Phylogenomics of strongylocentrotid sea urchins.Family-Level Sampling of Mitochondrial Genomes in Coleoptera: Compositional Heterogeneity and PhylogeneticsIs it an ant or a butterfly? Convergent evolution in the mitochondrial gene order of Hymenoptera and LepidopteraPhylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen dataAncestral gene organization in the mitochondrial genome of Thyridosmylus langii (McLachlan, 1870) (Neuroptera: Osmylidae) and implications for lacewing evolutionSources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropodsWhy barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics.The complete mitochondrial genome of Spilonota lechriaspis Meyrick (Lepidoptera: Tortricidae).Ten new complete mitochondrial genomes of pulmonates (Mollusca: Gastropoda) and their impact on phylogenetic relationships.The complete mitochondrial genome of Flustra foliacea (Ectoprocta, Cheilostomata) - compositional bias affects phylogenetic analyses of lophotrochozoan relationships.Mitochondrial genomes of two Barklice, Psococerastis albimaculata and Longivalvus hyalospilus (Psocoptera: Psocomorpha): contrasting rates in mitochondrial gene rearrangement between major lineages of Psocodea.The embedding problem for markov models of nucleotide substitution.Bulk de novo mitogenome assembly from pooled total DNA elucidates the phylogeny of weevils (Coleoptera: Curculionoidea)The complete nucleotide sequence of the mitochondrial genome of Bactrocera minax (Diptera: Tephritidae).The impact of taxon sampling on phylogenetic inference: a review of two decades of controversyStatistics and truth in phylogenomics.Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for Anchored Phylogenomics.Characterization of the complete mitochondrial genome of Acanthoscelides obtectus (Coleoptera: Chrysomelidae: Bruchinae) with phylogenetic analysis.Genome-wide survey of nuclear protein-coding markers for beetle phylogenetics and their application in resolving both deep and shallow-level divergences.Multiple Lines of Evidence from Mitochondrial Genomes Resolve Phylogenetic Relationships of Parasitic Wasps in Braconidae.The importance of replicating genomic analyses to verify phylogenetic signal for recently evolved lineages.Revisiting Coleoptera a + T-rich region: structural conservation, phylogenetic and phylogeographic approaches in mitochondrial control region of bioluminescent Elateridae species (Coleoptera).Phylogenetic relationships of Hemiptera inferred from mitochondrial and nuclear genes.The mitochondrial genome of the multicolored Asian lady beetle Harmonia axyridis (Pallas) and a phylogenetic analysis of the Polyphaga (Insecta: Coleoptera).Male biased gene flow in banana pseudostem weevil (Odoiporus longicollis Oliver) as revealed by analysis of the COI-tRNA(Leu) COII region.The complete mitogenome of Eucryptorrhynchus brandti (Harold) (Insecta: Coleoptera: Curculionidae).The influence of rate heterogeneity among sites on the time dependence of molecular rates.Complete mitochondrial genome of the whiter-spotted flower chafer, Protaetia brevitarsis (Coleoptera: Scarabaeidae).Addressing gene tree discordance and non-stationarity to resolve a multi-locus phylogeny of the flatfishes (Teleostei: Pleuronectiformes).Evolutionary history of Coleoptera revealed by extensive sampling of genes and species.Complete mitochondrial genome of the seven-spotted lady beetle, Coccinella septempunctata (Coleoptera: Coccinellidae).Phylogeny and evolution of Staphyliniformia and Scarabaeiformia: forest litter as a stepping stone for diversification of nonphytophagous beetlesHow to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research300 million years of diversification: elucidating the patterns of orthopteran evolution based on comprehensive taxon and gene samplingThe beetle tree of life reveals that Coleoptera survived end-Permian mass extinction to diversify during the Cretaceous terrestrial revolutionMitochondrial phylogenomics illuminates the evolutionary history of NeuropteridaA view from the edge of the forest: recent progress in understanding the relationships of the insect orders
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When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics
description
article
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im März 2010 veröffentlichter wissenschaftlicher Artikel
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wetenschappelijk artikel
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наукова стаття, опублікована в березні 2010
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name
When phylogenetic assumptions ...... le mitochondrial phylogenomics
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When phylogenetic assumptions ...... le mitochondrial phylogenomics
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type
label
When phylogenetic assumptions ...... le mitochondrial phylogenomics
@en
When phylogenetic assumptions ...... le mitochondrial phylogenomics
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prefLabel
When phylogenetic assumptions ...... le mitochondrial phylogenomics
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When phylogenetic assumptions ...... le mitochondrial phylogenomics
@nl
P2093
P2860
P921
P1476
When phylogenetic assumptions ...... le mitochondrial phylogenomics
@en
P2093
HOJUN SONG
KELLY B. MILLER
MICHAEL F. WHITING
NATHAN C. SHEFFIELD
STEPHEN L. CAMERON
P2860
P304
P356
10.1111/J.1365-3113.2009.00517.X
P577
2010-03-01T00:00:00Z