The essential dynamics of thermolysin: Confirmation of the hinge-bending motion and comparison of simulations in vacuum and water
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Structure, dynamics, and interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studiesStructural insights into E. coli porphobilinogen deaminase during synthesis and exit of 1-hydroxymethylbilaneDetection of functional modes in protein dynamicsEngineering photocycle dynamics. Crystal structures and kinetics of three photoactive yellow protein hinge-bending mutantsPAS domains. Common structure and common flexibilityComparison of the Internal Dynamics of Metalloproteases Provides New Insights on Their Function and Evolution.Towards the prediction of order parameters from molecular dynamics simulations in proteins.Analysis of the dynamics of rhizomucor miehei lipase at different temperatures.Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data.Single-point amino acid substitutions at the 119th residue of thermolysin and their pressure-induced activation.Accurate prediction of the binding free energy and analysis of the mechanism of the interaction of replication protein A (RPA) with ssDNA.Ligand-dependent conformations and dynamics of the serotonin 5-HT(2A) receptor determine its activation and membrane-driven oligomerization propertiesInsight derived from molecular dynamics simulations into molecular motions, thermodynamics and kinetics of HIV-1 gp120Effect of the Solvent Temperatures on Dynamics of Serine Protease Proteinase KProtein dynamics and motions in relation to their functions: several case studies and the underlying mechanisms.Probing the global and local dynamics of aminoacyl-tRNA synthetases using all-atom and coarse-grained simulations.Hierarchical structure of the energy landscape of proteins revisited by time series analysis. II. Investigation of explicit solvent effects.On the analysis and comparison of conformer-specific essential dynamics upon ligand binding to a protein.CNA web server: rigidity theory-based thermal unfolding simulations of proteins for linking structure, (thermo-)stability, and function.Structural features of the regulatory ACT domain of phenylalanine hydroxylase.Mapping flexibility and the assembly switch of cell division protein FtsZ by computational and mutational approaches.Insight derived from molecular dynamics simulation into substrate-induced changes in protein motions of proteinase K.Protein rigidity and thermophilic adaptation.Dynamics of the substrate binding pocket in the presence of an inhibitor covalently attached to a fungal lipase.The effect of calciums on molecular motions of proteinase K.Inhibitor binding alters the directions of domain motions in HIV-1 reverse transcriptase.Molecular simulations study of ligand-release mechanism in an odorant-binding protein from the southern house mosquito.Molecular dynamics investigation of Helicobacter pylori chemotactic protein CheY1 and two mutants.Exploring the essential collective dynamics of interacting proteins: application to prion protein dimers.Investigations of Takeout proteins' ligand binding and release mechanism using molecular dynamics simulation.Time series analysis of collective motions in proteins.Global and local motions in ribonuclease A: a molecular dynamics study.Effects of disease causing mutations on the essential motions in proteins.An efficient method for sampling the essential subspace of proteins.New insights in the activation of human cholesterol esterase to design potent anti-cholesterol drugs.Substrate specificity in the highly heterogeneous M4 peptidase family is determined by a small subset of amino acids
P2860
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P2860
The essential dynamics of thermolysin: Confirmation of the hinge-bending motion and comparison of simulations in vacuum and water
description
article
@en
im Mai 1995 veröffentlichter wissenschaftlicher Artikel
@de
wetenschappelijk artikel
@nl
наукова стаття, опублікована в травні 1995
@uk
name
The essential dynamics of ther ...... imulations in vacuum and water
@en
The essential dynamics of ther ...... imulations in vacuum and water
@nl
type
label
The essential dynamics of ther ...... imulations in vacuum and water
@en
The essential dynamics of ther ...... imulations in vacuum and water
@nl
prefLabel
The essential dynamics of ther ...... imulations in vacuum and water
@en
The essential dynamics of ther ...... imulations in vacuum and water
@nl
P2093
P356
P1433
P1476
The essential dynamics of ther ...... imulations in vacuum and water
@en
P2093
Berendsen HJ
Eijsink VG
Linssen AB
P356
10.1002/PROT.340220107
P407
P577
1995-05-01T00:00:00Z