about
Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases.Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands.Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli70% efficiency of bistate molecular machines explained by information theory, high dimensional geometry and evolutionary convergenceInformation analysis of Fis binding sitesClaude Shannon: biologist. The founder of information theory used biology to formulate the channel capacity.A brief review of molecular information theory.Anatomy of Escherichia coli sigma70 promoters.Identification of a Cryptic Bacterial Promoter in Mouse (mdr1a) P-Glycoprotein cDNA.Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique.Correlation between binding rate constants and individual information of E. coli Fis binding sitesHigh information conservation implies that at least three proteins bind independently to F plasmid incD repeatsDiscovery of Fur binding site clusters in Escherichia coli by information theory models.Small membrane proteins found by comparative genomics and ribosome binding site models.Molecular flip-flops formed by overlapping Fis sites.Genome-Wide Transcriptional Regulation and Chromosome Structural Arrangement by GalR in E. coli.Promoter variants in the MSMB gene associated with prostate cancer regulate MSMB/NCOA4 fusion transcriptsInformation analysis of sequences that bind the replication initiator RepA.Delila system tools.Two essential splice lariat branchpoint sequences in one intron in a xeroderma pigmentosum DNA repair gene: mutations result in reduced XPC mRNA levels that correlate with cancer risk.An Evolutionary/Biochemical Connection Between Promoter- and Primer-Dependent Polymerases Revealed by Selective Evolution of Ligands by Exponential Enrichment (SELEX).Information content of individual genetic sequences.Using information content and base frequencies to distinguish mutations from genetic polymorphisms in splice junction recognition sites.Density of σ70 promoter-like sites in the intergenic regions dictates the redistribution of RNA polymerase during osmotic stress in Escherichia coliMeasuring molecular informationInterdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promotersRedundant designations of BRCA1 intron 11 splicing mutation; c. 4216-2A>G; IVS11-2A>G; L78833, 37698, A>GRestriction enzymes use a 24 dimensional coding space to recognize 6 base long DNA sequences
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description
researcher ORCID ID = 0000-0002-9841-1531
@en
wetenschapper
@nl
name
Thomas D Schneider
@ast
Thomas D Schneider
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Thomas D Schneider
@es
Thomas D Schneider
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type
label
Thomas D Schneider
@ast
Thomas D Schneider
@en
Thomas D Schneider
@es
Thomas D Schneider
@nl
prefLabel
Thomas D Schneider
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Thomas D Schneider
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Thomas D Schneider
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Thomas D Schneider
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7401836448
P2456
P31
P496
0000-0002-9841-1531