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Structure-function relationships of glucansucrase and fructansucrase enzymes from lactic acid bacteriaFACIL: Fast and Accurate Genetic Code Inference and LogoMicrobial bioinformatics for food safety and productionMixed-culture transcriptome analysis reveals the molecular basis of mixed-culture growth in Streptococcus thermophilus and Lactobacillus bulgaricusESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data.PreP: gene expression data pre-processing.MicroPreP: a cDNA microarray data pre-processing framework.SIMAGE: simulation of DNA-microarray gene expression data.Saturation and quantization reduction in microarray experiments using two scans at different sensitivities.Fractional factorial design for optimization of the SELDI protocol for human adipose tissue culture media.MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL-17- and TLR4-dependent arthritis.Microbiome dynamics of human epidermis following skin barrier disruption.From microbial gene essentiality to novel antimicrobial drug targetsBAGEL: a web-based bacteriocin genome mining tool.A predictive signature gene set for discriminating active from latent tuberculosis in Warao Amerindian childrenGenome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman.Reduce manual curation by combining gene predictions from multiple annotation engines, a case study of start codon predictionThe adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition.Degenerate target sites mediate rapid primed CRISPR adaptation.Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology.CiVi: circular genome visualization with unique features to analyze sequence elements.Akkermansia muciniphila and Helicobacter typhlonius modulate intestinal tumor development in mice.An In vitro Model for Bacterial Growth on Human Stratum Corneum.Strain-Dependent Transcriptome Signatures for Robustness in Lactococcus lactis.The relative value of operon predictions.Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.Screening metatranscriptomes for toxin genes as functional drivers of human colorectal cancer.Regulation of glutamine and glutamate metabolism by GlnR and GlnA in Streptococcus pneumoniae.Transcriptome analysis reveals mechanisms by which Lactococcus lactis acquires nisin resistanceThe Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element.SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks.Gut microbiome in ADHD and its relation to neural reward anticipationAdvances and perspectives in computational prediction of microbial gene essentiality.Projector: automatic contig mapping for gap closure purposes.Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium.Transmissible Mycobacterium tuberculosis Strains Share Genetic Markers and Immune Phenotypes.Diversity of acid stress resistant variants of Listeria monocytogenes and the potential role of ribosomal protein S21 encoded by rpsUGenomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus LBB.B5.
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researcher ORCID ID = 0000-0003-0741-2991
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Sacha van Hijum
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Sacha van Hijum
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P21
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0000-0003-0741-2991