about
Further evidence for the likely completeness of the library of solved single domain protein structuresCalculating an optimal box size for ligand docking and virtual screening against experimental and predicted binding pocketsA graph-based approach to construct target-focused libraries for virtual screeningHydrophobic collapse in (in silico) protein foldingFINDSITE: a threading-based approach to ligand homology modelingeMatchSite: sequence order-independent structure alignments of ligand binding pockets in protein modelsGeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous ComputingSPI--structure predictability index for protein sequences.eVolver: an optimization engine for evolving protein sequences to stabilize the respective structures.Exploring the "dark matter" of a mammalian proteome by protein structure and function modeling.Localization of ligand binding site in proteins identified in silico.Ligation site in proteins recognized in silico.What is the relationship between the global structures of apo and holo proteins?Developing eThread pipeline using SAGA-pilot abstraction for large-scale structural bioinformatics.The continuity of protein structure space is an intrinsic property of proteinsQ-Dock(LHM): Low-resolution refinement for ligand comparative modeling.PSiFR: an integrated resource for prediction of protein structure and function.The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinementComprehensive structural and functional characterization of the human kinome by protein structure modeling and ligand virtual screening.Why not consider a spherical protein? Implications of backbone hydrogen bonding for protein structure and functioneThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures.The utility of artificially evolved sequences in protein threading and fold recognition.Unleashing the power of meta-threading for evolution/structure-based function inference of proteins.Computational redesign of bacterial biotin carboxylase inhibitors using structure-based virtual screening of combinatorial libraries.Across-proteome modeling of dimer structures for the bottom-up assembly of protein-protein interaction networks.Cross-reactivity virtual profiling of the human kinome by X-react(KIN): a chemical systems biology approachUse of protein cross-linking and radiolytic footprinting to elucidate PsbP and PsbQ interactions within higher plant Photosystem II.FINDSITE-metal: integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level.A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation.Nonlinear scoring functions for similarity-based ligand docking and binding affinity prediction.Predicted binding site information improves model ranking in protein docking using experimental and computer-generated target structures.Break Down in Order To Build Up: Decomposing Small Molecules for Fragment-Based Drug Design with eMolFrag.FINDSITE: a combined evolution/structure-based approach to protein function predictionQ-Dock: Low-resolution flexible ligand docking with pocket-specific threading restraints.Predicting protein interface residues using easily accessible on-line resources.Template-based identification of protein-protein interfaces using eFindSitePPI.Aromatic interactions at the ligand-protein interface: Implications for the development of docking scoring functions.Structure-Based Drug Discovery Accelerated by Many-Core Devices.eFindSite: Enhanced Fingerprint-Based Virtual Screening Against Predicted Ligand Binding Sites in Protein Models.Deletion of a Predicted β-Sheet Domain within the Amino Terminus of Herpes Simplex Virus Glycoprotein K Conserved among Alphaherpesviruses Prevents Virus Entry into Neuronal Axons.
P50
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P50
description
polski biochemik
@pl
researcher ORCID ID = 0000-0002-6204-2869
@en
wetenschapper
@nl
name
Michal Brylinski
@ast
Michal Brylinski
@en
Michal Brylinski
@es
Michal Brylinski
@nl
Michał Bryliński
@pl
type
label
Michal Brylinski
@ast
Michal Brylinski
@en
Michal Brylinski
@es
Michal Brylinski
@nl
Michał Bryliński
@pl
prefLabel
Michal Brylinski
@ast
Michal Brylinski
@en
Michal Brylinski
@es
Michal Brylinski
@nl
Michał Bryliński
@pl
P106
P31
P3124
P496
0000-0002-6204-2869