Practical guidelines for the comprehensive analysis of ChIP-seq data
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Uncovering correlated variability in epigenomic datasets using the Karhunen-Loeve transformA Quick Introduction to Version Control with Git and GitHubWnt-signalling pathways and microRNAs network in carcinogenesis: experimental and bioinformatics approachesA review of three different studies on hidden markov models for epigenetic problems: a computational perspectiveCore and region-enriched networks of behaviorally regulated genes and the singing genomePAtCh-Cap: input strategy for improving analysis of ChIP-exo data sets and beyondMultiple Hepatic Regulatory Variants at the GALNT2 GWAS Locus Associated with High-Density Lipoprotein CholesterolDetecting and correcting the binding-affinity bias in ChIP-seq data using inter-species information.Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data.Motif-based analysis of large nucleotide data sets using MEME-ChIP.bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes.Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems.A review of ensemble methods for de novo motif discovery in ChIP-Seq data.The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data.ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data.Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis.Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features.Broad-Enrich: functional interpretation of large sets of broad genomic regionsProfiling the microRNA Expression in Human iPS and iPS-derived Retinal Pigment Epithelium.The intriguing complexities of mammalian gene regulation: how to link enhancers to regulated genes. Are we there yet?Identifying differential transcription factor binding in ChIP-seq.Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq).Is this the right normalization? A diagnostic tool for ChIP-seq normalization.Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic GenomesMixChIP: a probabilistic method for cell type specific protein-DNA binding analysis.Assessing quality standards for ChIP-seq and related massive parallel sequencing-generated datasets: When rating goes beyond avoiding the crisis.Practical Guidelines for High-Resolution Epigenomic Profiling of Nucleosomal Histones in Postmortem Human Brain Tissue.Quantitative genomic analysis of RecA protein binding during DNA double-strand break repair reveals RecBCD action in vivoReusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis.fluff: exploratory analysis and visualization of high-throughput sequencing dataMicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps.Preparation of Low-Input and Ligation-Free ChIP-seq Libraries Using Template-Switching Technology.Histone Methylation Dynamics and Gene Regulation Occur through the Sensing of One-Carbon MetabolismNucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing dataInitiation of stem cell differentiation involves cell cycle-dependent regulation of developmental genes by Cyclin DThe major horse satellite DNA family is associated with centromere competenceCardioTF, a database of deconstructing transcriptional circuits in the heart system.An Entropy-Based Position Projection Algorithm for Motif Discovery.Lethal lung hypoplasia and vascular defects in mice with conditional Foxf1 overexpression.Hematopoietic transcriptional mechanisms: from locus-specific to genome-wide vantage points.
P2860
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P2860
Practical guidelines for the comprehensive analysis of ChIP-seq data
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2013 nî lūn-bûn
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2013 թուականին հրատարակուած գիտական յօդուած
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2013 թվականին հրատարակված գիտական հոդված
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2013年の論文
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2013年論文
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2013年論文
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2013年論文
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2013年論文
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2013年論文
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Practical guidelines for the comprehensive analysis of ChIP-seq data
@ast
Practical guidelines for the comprehensive analysis of ChIP-seq data
@en
Practical guidelines for the comprehensive analysis of ChIP-seq data
@en-gb
Practical guidelines for the comprehensive analysis of ChIP-seq data
@nl
type
label
Practical guidelines for the comprehensive analysis of ChIP-seq data
@ast
Practical guidelines for the comprehensive analysis of ChIP-seq data
@en
Practical guidelines for the comprehensive analysis of ChIP-seq data
@en-gb
Practical guidelines for the comprehensive analysis of ChIP-seq data
@nl
altLabel
Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data
@en
prefLabel
Practical guidelines for the comprehensive analysis of ChIP-seq data
@ast
Practical guidelines for the comprehensive analysis of ChIP-seq data
@en
Practical guidelines for the comprehensive analysis of ChIP-seq data
@en-gb
Practical guidelines for the comprehensive analysis of ChIP-seq data
@nl
P2093
P2860
P50
P3181
P1476
Practical guidelines for the comprehensive analysis of ChIP-seq data
@en
P2093
Cenny Taslim
Istvan Ladunga
Pawel Krajewski
P2860
P304
P3181
P356
10.1371/JOURNAL.PCBI.1003326
P407
P577
2013-01-01T00:00:00Z