Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice - sprookjes - yvandenbroek - TriplyDB

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

http://www.wikidata.org/entity/Q22065740

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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change Genome size evolution at the speciation level: the cryptic species complex Brachionus plicatilis (Rotifera)Comparative genomics and molecular dynamics of DNA repeats in eukaryotes Polyploidy in the olive complex (Olea europaea): evidence from flow cytometry and nuclear microsatellite analyses RetrOryza: a database of the rice LTR-retrotransposons Ecological and genetic factors linked to contrasting genome dynamics in seed plants Evolution of plant genome architecture The contribution of transposable elements to size variations between four teleost genomes Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes Polyploid evolution in Oryza officinalis complex of the genus Oryza Proliferation of Ty3/gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data Evolution of genome size and complexity in Pinus Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing Human-mediated emergence as a weed and invasive radiation in the wild of the CD genome allotetraploid rice species (Oryza, Poaceae) in the Neotropics DNA transposons and the evolution of eukaryotic genomes Mutator System Derivatives Isolated from Sugarcane Genome Sequence Assembly and comparative analysis of transposable elements from low coverage genomic sequence data in Asparagales.De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species.Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome Long Terminal Repeat Retrotransposon Content in Eight Diploid Sunflower Species Inferred from Next-Generation Sequence Data.Methods for accurate quantification of LTR-retrotransposon copy number using short-read sequence data: a case study in Sorghum.LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss.Transposable element distribution, abundance and role in genome size variation in the genus Oryza.LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice.FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae.Whole genome duplications and a 'function' for junk DNA? Facts and hypotheses Copia and Gypsy retrotransposons activity in sunflower (Helianthus annuus L.).Molecular characterization of the Sasanda LTR copia retrotransposon family uncovers their recent amplification in Triticum aestivum (L.) genome.Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.Genome size evolution in pufferfish: an insight from BAC clone-based Diodon holocanthus genome sequencing.LTR retroelements in the genome of Daphnia pulex.Inferring the evolutionary mechanism of the chloroplast genome size by comparing whole-chloroplast genome sequences in seed plants Paleogenomic analysis of the short arm of chromosome 3 reveals the history of the African and Asian progenitors of cultivated rices.Correlated evolution of LTR retrotransposons and genome size in the genus Eleocharis.

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P2860

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

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2006 nî lūn-bûn

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2006 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

Phylogeny of rice genomes with emphasis on origins of allotetraploid species

Basic local alignment search tool

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

EMBOSS: the European Molecular Biology Open Software Suite

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

Artemis: sequence visualization and annotation

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

The map-based sequence of the rice genome

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