Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks - sprookjes - yvandenbroek - TriplyDB

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

http://www.wikidata.org/entity/Q24633890

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Augmenting transcriptome assembly by combining de novo and genome-guided tools Development and Characterization of Bladder Cancer Patient-Derived Xenografts for Molecularly Guided Targeted Therapy Transcription factors OVOL1 and OVOL2 induce the mesenchymal to epithelial transition in human cancer Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data The vast, conserved mammalian lincRNome A bioinformatics approach reveals novel interactions of the OVOL transcription factors in the regulation of epithelial - mesenchymal cell reprogramming and cancer progression Differential gene expression and alternative splicing in insect immune specificity An extensive evaluation of read trimming effects on Illumina NGS data analysis Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens.The genomic landscape underlying phenotypic integrity in the face of gene flow in crows The landscape of long noncoding RNAs in the human transcriptome Genome and transcriptome of the porcine whipworm Trichuris suis The Capsella rubella genome and the genomic consequences of rapid mating system evolution The octopus genome and the evolution of cephalopod neural and morphological novelties A physical, genetic and functional sequence assembly of the barley genome N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments Comparative performance of transcriptome assembly methods for non-model organisms Bluetongue Virus NS4 Protein Is an Interferon Antagonist and a Determinant of Virus Virulence Molecular signatures associated with ZIKV exposure in human cortical neural progenitors Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine Transcriptome Analysis in Domesticated Species: Challenges and Strategies Analysis of Whole Transcriptome Sequencing Data: Workflow and Software Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis Survey of Programs Used to Detect Alternative Splicing Isoforms from Deep Sequencing Data In Silico Genetic Susceptibility to Rhodococcus equi The expanding genetic toolbox of the wasp Nasonia vitripennis and its relatives Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics Massively parallel sequencing: the new frontier of hematologic genomics Use of RNA sequencing to evaluate rheumatic disease patients Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing Advanced Applications of RNA Sequencing and Challenges Gene expression defines natural changes in mammalian lifespan Introduction to sequencing the brain transcriptome Cis-Natural Antisense Transcripts Are Mainly Co-expressed with Their Sense Transcripts and Primarily Related to Energy Metabolic Pathways during Muscle Development.Assessing Dissimilarity Measures for Sample-Based Hierarchical Clustering of RNA Sequencing Data Using Plasmode Datasets Immunological Response to Single Pathogen Challenge with Agents of the Bovine Respiratory Disease Complex: An RNA-Sequence Analysis of the Bronchial Lymph Node Transcriptome Chronic Replication Problems Impact Cell Morphology and Adhesion of DNA Ligase I Defective Cells Lactic acid is a sperm motility inactivation factor in the sperm storage tubules

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

http://www.wikidata.org/entity/Q24633890

description

2012 nî lūn-bûn

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2012 թուականի Մարտին հրատարակուած գիտական յօդուած

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2012 թվականի մարտին հրատարակված գիտական հոդված

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2012年の論文

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Nature Protocols

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Adam Roberts

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Cole Trapnell

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Daehwan Kim

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David R Kelley

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Geo Pertea

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Differential expression analysis for sequence count data

Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Biases in Illumina transcriptome sequencing caused by random hexamer priming

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

The transcriptional landscape of the yeast genome defined by RNA sequencing

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10.1038/NPROT.2012.016

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Harold Pimentel

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2012-03-01T00:00:00Z

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221881694

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