Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments
about
RNAalifold: improved consensus structure prediction for RNA alignments.Effects of using coding potential, sequence conservation and mRNA structure conservation for predicting pyrrolysine containing genesRNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequencesGraphClust: alignment-free structural clustering of local RNA secondary structuresImproving the accuracy of predicting secondary structure for aligned RNA sequencesPredictions of RNA secondary structure by combining homologous sequence informationComputational analysis of noncoding RNAsBioinformatics of prokaryotic RNAsMicroRNA discovery by similarity search to a database of RNA-seq profilesRNAsnp: efficient detection of local RNA secondary structure changes induced by SNPs.Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure predictionDirect updating of an RNA base-pairing probability matrix with marginal probability constraintsGeneralized centroid estimators in bioinformaticsPrediction of RNA secondary structure by maximizing pseudo-expected accuracy.Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides.From structure prediction to genomic screens for novel non-coding RNAs.Computational modeling of RNA 3D structures, with the aid of experimental restraints.Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elementsDAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.Quantifying variances in comparative RNA secondary structure predictionIdentifying and searching for conserved RNA localisation signals.Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencingCentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequencesA classification of bioinformatics algorithms from the viewpoint of maximizing expected accuracy (MEA)Computational detection of abundant long-range nucleotide covariation in Drosophila genomesDe novo prediction of structured RNAs from genomic sequences.Understanding the transcriptome through RNA structure.RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domainPETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequencesThe PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences.A simple, practical and complete O(n3/log n)-time algorithm for RNA folding using the Four-Russians speedup.Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions.Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots.Comparative RNA Genomics.Translational co-regulation of a ligand and inhibitor by a conserved RNA element.Fast accessibility-based prediction of RNA-RNA interactions.RNA-RNA interaction prediction based on multiple sequence alignments.
P2860
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P2860
Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments
description
2008 nî lūn-bûn
@nan
2008 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի նոյեմբերին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
Unifying evolutionary and ther ...... folding of multiple alignments
@ast
Unifying evolutionary and ther ...... folding of multiple alignments
@en
Unifying evolutionary and ther ...... folding of multiple alignments
@nl
type
label
Unifying evolutionary and ther ...... folding of multiple alignments
@ast
Unifying evolutionary and ther ...... folding of multiple alignments
@en
Unifying evolutionary and ther ...... folding of multiple alignments
@nl
prefLabel
Unifying evolutionary and ther ...... folding of multiple alignments
@ast
Unifying evolutionary and ther ...... folding of multiple alignments
@en
Unifying evolutionary and ther ...... folding of multiple alignments
@nl
P2860
P50
P356
P1476
Unifying evolutionary and ther ...... folding of multiple alignments
@en
P2093
Stefan E Seemann
P2860
P304
P356
10.1093/NAR/GKN544
P407
P577
2008-10-04T00:00:00Z