Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions
about
A phylogenetic analysis of the brassicales clade based on an alignment-free sequence comparison methodWhole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)Detection, Characterization, and Typing of Shiga Toxin-Producing Escherichia coliRecovering full-length viral genomes from metagenomesNew developments of alignment-free sequence comparison: measures, statistics and next-generation sequencingAlignment-free phylogenetics and population geneticsOrganizational heterogeneity of vertebrate genomesDiversity of the Germination Apparatus in Clostridium botulinum Groups I, II, III, and IVCnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS dataGenome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter.Interpreting genomic data via entropic dissection.Stochastic sensitivity analysis and kernel inference via distributional data.Googling DNA sequences on the World Wide Web.Determining the quality and complexity of next-generation sequencing data without a reference genome.GrammR: graphical representation and modeling of count data with application in metagenomics.Efficient distinction of invasive aquatic plant species from non-invasive related species using DNA barcoding.Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution.Sequence analysis by iterated maps, a reviewMonte Carlo simulation of mechanical unfolding of proteins based on a simple two-state model.Frequency analysis techniques for identification of viral genetic data.RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles.2011 German Escherichia coli O104:H4 outbreak: whole-genome phylogeny without alignment.Phylogenetic incongruence in E. coli O104: understanding the evolutionary relationships of emerging pathogens in the face of homologous recombination.Previously unknown and highly divergent ssDNA viruses populate the oceansAlignment-free genetic sequence comparisons: a review of recent approaches by word analysis.Kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison.A coverage criterion for spaced seeds and its applications to support vector machine string kernels and k-mer distancesrasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence ComparisonMetabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case studyReal time classification of viruses in 12 dimensions.Phage cluster relationships identified through single gene analysis.Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes.Centroid based clustering of high throughput sequencing reads based on n-mer counts.Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regionsNew powerful statistics for alignment-free sequence comparison under a pattern transfer model.Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns.Genomic signal processing methods for computation of alignment-free distances from DNA sequencesAn assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing dataOn the comparison of regulatory sequences with multiple resolution Entropic Profiles.Use of Alignment-Free Phylogenetics for Rapid Genome Sequence-Based Typing of Helicobacter pylori Virulence Markers and Antibiotic Susceptibility
P2860
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P2860
Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions
description
2009 nî lūn-bûn
@nan
2009 թուականի Փետրուարին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի փետրվարին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年学术文章
@wuu
2009年学术文章
@zh-cn
2009年学术文章
@zh-hans
2009年学术文章
@zh-my
2009年学术文章
@zh-sg
2009年學術文章
@yue
name
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@ast
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@en
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@nl
type
label
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@ast
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@en
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@nl
prefLabel
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@ast
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@en
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@nl
P2860
P50
P3181
P356
P1476
Alignment-free genome comparis ...... (FFP) and optimal resolutions
@en
P2093
Guohong A Wu
P2860
P304
P3181
P356
10.1073/PNAS.0813249106
P407
P577
2009-02-24T00:00:00Z