Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs. - sprookjes - yvandenbroek - TriplyDB

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs.

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs.

http://www.wikidata.org/entity/Q24815013

about

A periodic pattern of mRNA secondary structure created by the genetic code Structured RNAs in the ENCODE selected regions of the human genome Evidence for widespread association of mammalian splicing and conserved long-range RNA structures Both Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution.e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation.The impact of RNA structure on coding sequence evolution in both bacteria and eukaryotes.Detecting non-coding selective pressure in coding regions.Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions.AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures Conserved secondary structures in Aspergillus.Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures Structural relationships between highly conserved elements and genes in vertebrate genomes.Alu exonization events reveal features required for precise recognition of exons by the splicing machinery Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12 Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity.Genome-wide patterns of codon bias are shaped by natural selection in the purple sea urchin, Strongylocentrotus purpuratus Sensitive measurement of single-nucleotide polymorphism-induced changes of RNA conformation: application to disease studies.Evolutionary divergence of exon flanks: a dissection of mutability and selection.Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing.Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes.Ancient properties of spider silks revealed by the complete gene sequence of the prey-wrapping silk protein (AcSp1).Number variation of high stability regions is correlated with gene functions.Transient RNA structure features are evolutionarily conserved and can be computationally predicted.Deciphering the rules by which dynamics of mRNA secondary structure affect translation efficiency in Saccharomyces cerevisiae.Computational RNomics: structure identification and functional prediction of non-coding RNAs in silico.Insights into RNA structure and function from genome-wide studies.Evolutionary clues in lncRNAs.Optimisation of the mRNA secondary structure to improve the expression of interleukin-24 (IL-24) in Escherichia coli.Estimating the prevalence of functional exonic splice regulatory information.Conformational Dynamics of mRNA in Gene Expression as New Pharmaceutical Target.RNA structure is a key regulatory element in pathological ATM and CFTR pseudoexon inclusion events.Reduced splicing efficiency induced by synonymous substitutions may generate a substrate for natural selection of new splicing isoforms: the case of CFTR exon 12.Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes.Sequence-structure relationships in yeast mRNAs.Uncoupling RNA virus replication from transcription via the polymerase: functional and evolutionary insights Correlation between nucleotide composition and folding energy of coding sequences with special attention to wobble bases.Conservation of mRNA secondary structures may filter out mutations in Escherichia coli evolution.On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes.Discovery of proteomic code with mRNA assisted protein folding.

P2860

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P2860

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs.

http://www.wikidata.org/entity/Q24815013

description

2005 nî lūn-bûn

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2005 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2005 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2005年の論文

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2005年学术文章

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2005年学术文章

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Statistical evidence for conse ...... eukaryotic mRNAs and pre-mRNAs

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Statistical evidence for conse ...... ukaryotic mRNAs and pre-mRNAs.

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Statistical evidence for conse ...... ukaryotic mRNAs and pre-mRNAs.

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Statistical evidence for conse ...... eukaryotic mRNAs and pre-mRNAs

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Statistical evidence for conse ...... ukaryotic mRNAs and pre-mRNAs.

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Statistical evidence for conse ...... ukaryotic mRNAs and pre-mRNAs.

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Statistical evidence for conse ...... eukaryotic mRNAs and pre-mRNAs

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Statistical evidence for conse ...... ukaryotic mRNAs and pre-mRNAs.

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Statistical evidence for conse ...... ukaryotic mRNAs and pre-mRNAs.

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Irmtraud M Meyer

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István Miklós

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P2860

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Mfold web server for nucleic acid folding and hybridization prediction

Synonymous mutations in CFTR exon 12 affect splicing and are not neutral in evolution.

Metabolite-binding RNA domains are present in the genes of eukaryotes

3' nontranslated RNA signals required for replication of hepatitis C virus RNA

An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression

A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication

Pfold: RNA secondary structure prediction using stochastic context-free grammars

Co-transcriptional folding is encoded within RNA genes

Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome

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10.1093/NAR/GKI923

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