cisRED: a database system for genome-scale computational discovery of regulatory elements. - sprookjes - yvandenbroek - TriplyDB

cisRED: a database system for genome-scale computational discovery of regulatory elements.

cisRED: a database system for genome-scale computational discovery of regulatory elements.

http://www.wikidata.org/entity/Q25254981

about

A miRNA signature of prion induced neurodegeneration Transcriptional regulation of the Ufm1 conjugation system in response to disturbance of the endoplasmic reticulum homeostasis and inhibition of vesicle trafficking NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data ORegAnno: an open-access community-driven resource for regulatory annotation DBD--taxonomically broad transcription factor predictions: new content and functionality VISTA Enhancer Browser--a database of tissue-specific human enhancers TBCK influences cell proliferation, cell size and mTOR signaling pathway Ensembl 2013 ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation Characterization of human chromosomal material exchange with regard to the chromosome translocations using next-generation sequencing data GW8510 increases insulin expression in pancreatic alpha cells through activation of p53 transcriptional activity Novel factors in the pathogenesis of psoriasis and potential drug candidates are found with systems biology approach Functional characterization of motif sequences under purifying selection Statistical approaches to use a model organism for regulatory sequences annotation of newly sequenced species Nencki Genomics Database--Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifs.FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments Practical strategies for discovering regulatory DNA sequence motifs.Transcription factor map alignment of promoter regions.Large-scale discovery of promoter motifs in Drosophila melanogaster From genes to functional classes in the study of biological systems.TFCONES: a database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements The Innate Immune Database (IIDB)DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.Transcription factor site dependencies in human, mouse and rat genomes.Identification and characterization of putative methylation targets in the MAOA locus using bioinformatic approaches Touring Ensembl: a practical guide to genome browsing.Genomic features of the human dopamine transporter gene and its potential epigenetic States: implications for phenotypic diversity Predicting functionally important SNP classes based on negative selection.Contrasting genetic paths to morphological and physiological evolution.LLM3D: a log-linear modeling-based method to predict functional gene regulatory interactions from genome-wide expression data Preferential regulation of miRNA targets by environmental chemicals in the human genome TAFFEL: Independent Enrichment Analysis of gene sets.The differential disease regulome Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns.The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults TdIF1 recognizes a specific DNA sequence through its Helix-Turn-Helix and AT-hook motifs to regulate gene transcription.Genome-wide analysis of H4K5 acetylation associated with fear memory in mice New insights in osteogenic differentiation revealed by mass spectrometric assessment of phosphorylated substrates in murine skin mesenchymal cells High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants.Genome-wide investigation reveals pathogen-specific and shared signatures in the response of Caenorhabditis elegans to infection

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cisRED: a database system for genome-scale computational discovery of regulatory elements.

http://www.wikidata.org/entity/Q25254981

description

2006 nî lūn-bûn

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2006 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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name

cisRED: a database system for genome-scale computational discovery of regulatory elements

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cisRED: a database system for genome-scale computational discovery of regulatory elements

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A S Siddiqui

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Inparanoid: a comprehensive database of eukaryotic orthologs

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Computational prediction of transcription-factor binding site locations

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

Database resources of the National Center for Biotechnology Information

Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

The KEGG resource for deciphering the genome

The Gene Ontology (GO) database and informatics resource

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34

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