Analysis of natural variants of the hepatitis C virus internal ribosome entry site reveals that primary sequence plays a key role in cap-independent translation - sprookjes - yvandenbroek - TriplyDB

Analysis of natural variants of the hepatitis C virus internal ribosome entry site reveals that primary sequence plays a key role in cap-independent translation

Analysis of natural variants of the hepatitis C virus internal ribosome entry site reveals that primary sequence plays a key role in cap-independent translation

http://www.wikidata.org/entity/Q27487957

about

HCVIVdb: The hepatitis-C IRES variation database Is Single-Strand Conformation Polymorphism Analysis of the Full 5' Untranslated Region an Adequate Approach To Study Hepatitis C Virus Quasispecies Distribution?A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome Functional and structural analysis of the internal ribosome entry site present in the mRNA of natural variants of the HIV-1 The 5'-untranslated region of the mouse mammary tumor virus mRNA exhibits cap-independent translation initiation The 5' untranslated region of the human T-cell lymphotropic virus type 1 mRNA enables cap-independent translation initiation Analysis of the 5'UTR of HCV genotype 3 grown in vitro in human B cells, T cells, and macrophages.The hepatitis C virus 5'UTR genomic region remains highly conserved under HAART: a 4- to 8-year longitudinal study from HCV/HIV co-infected patients RNA structural elements of hepatitis C virus controlling viral RNA translation and the implications for viral pathogenesis.Base pairing between hepatitis C virus RNA and 18S rRNA is required for IRES-dependent translation initiation in vivo.A cis-acting element present within the Gag open reading frame negatively impacts on the activity of the HIV-1 IRES.Structural domains within the HIV-1 mRNA and the ribosomal protein S25 influence cap-independent translation initiation.Translation regulation by ribosomes: Increased complexity and expanded scope.RNA-binding proteins impacting on internal initiation of translation.Role of RNA structure motifs in IRES-dependent translation initiation of the coxsackievirus B3: new insights for developing live-attenuated strains for vaccines and gene therapy.Establishment of chronic hepatitis C virus infection: translational evasion of oxidative defence Understanding the potential of hepatitis C virus internal ribosome entry site domains to modulate translation initiation via their structure and function.LOOP IIId of the HCV IRES is essential for the structural rearrangement of the 40S-HCV IRES complex.The Andes hantavirus NSs protein is expressed from the viral small mRNA by a leaky scanning mechanism.The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation.Frequency of nucleotide sequence variations in the internal ribosome entry site region of hepatitis C virus RNA isolated from responding and non-responding patients with hepatitis C virus genotype 3 infection.Polypyrimidine tract-binding protein binds to the 5' untranslated region of the mouse mammary tumor virus mRNA and stimulates cap-independent translation initiation.Impaired binding of standard initiation factors eIF3b, eIF4G and eIF4B to domain V of the live-attenuated coxsackievirus B3 Sabin3-like IRES--alternatives for 5'UTR-related cardiovirulence mechanisms.The 3' untranslated region of the Andes hantavirus small mRNA functionally replaces the poly(A) tail and stimulates cap-dependent translation initiation from the viral mRNA.Alternative Mechanisms to Initiate Translation in Eukaryotic mRNAs.Genetic variations in host IL28B links to the detection of peripheral blood mononuclear cells-associated hepatitis C virus RNA in chronically infected patients.Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCV.Flow cytometric assay using two fluorescent proteins for the function of the internal ribosome entry site of hepatitis C virus.Non-canonical translation initiation of the spliced mRNA encoding the human T-cell leukemia virus type 1 basic leucine zipper protein

P2860

Q27468878-BB30E4DF-F278-4E1C-90BA-C9FE24968B6D Q27489519-F0AA4165-09C7-40BD-ABAE-868B805302A7 Q27489606-1762EF87-95FF-4A21-A04B-640A8C0883F8 Q28482125-EB302753-837A-4CA4-B4F5-8306E0A52F80 Q33608842-BE850698-8281-4ED9-A641-514B4BAB2845 Q33887817-69DA16D9-C234-4B30-815C-884E8EF31D53 Q34036050-2324A36A-3735-4BF8-8FCA-8436954EF445 Q34103186-D480D6CE-C480-4C98-92B1-7690A2CD9FAB Q34314871-19EE4E00-EC5F-4837-A83E-B97A8F13548E Q34442458-29782D68-9108-450E-BE0A-181C0A84ACD7 Q34602786-D87EEC9E-C02C-4921-A057-D4C7466AFE92 Q37072119-BBECA685-9FF0-4067-A910-2C3718C236ED Q37237973-710A47E0-5175-44BB-A3D8-7BB37D7864E1 Q37375354-2739ADCC-ACF5-43C6-86FA-21E10FF7F2D6 Q38123714-474790FB-9F50-4D37-8836-34F0655CA641 Q38198617-FC401797-232F-4E9A-BAC8-BA3731945244 Q38263444-9C48EAD1-948D-4F1F-A568-D2A9E88EC080 Q38530670-FADCA243-FD21-4983-9362-78212F8EB06B Q39430510-07AF0683-CCC2-41B0-9507-D6F779F58AFD Q39539402-F4F3B59F-A2A3-479B-9DAB-2BCA0B3B30F7 Q40218020-35CE5FC5-0E2F-4D61-A27E-2078E5CA5245 Q40856139-841291ED-6ABE-4196-B82F-1D4715E65680 Q42267347-C112A1E3-6E6A-4E47-BA66-97784F105C26 Q42428083-4C6156F9-AA95-4DC1-8C4B-41681A27E967 Q42554161-86C31BEE-F0C0-46A0-BBF8-141C7AB63EBD Q42990092-D51B7D8A-4669-4EFC-84CD-45C1ABEC3995 Q43031499-2B6E9E7B-3FFD-4036-8508-E40418AF8AA1 Q43038145-2E97CCB7-FC3F-481A-AC0F-93CADBFE12DF Q59134914-9EA3105A-106F-4B09-AE15-0D6CBD0DD982

P2860

Analysis of natural variants of the hepatitis C virus internal ribosome entry site reveals that primary sequence plays a key role in cap-independent translation

http://www.wikidata.org/entity/Q27487957

description

2009 nî lūn-bûn

@nan

2009 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի փետրվարին հրատարակված գիտական հոդված

@hy

2009年の論文

@ja

2009年論文

@yue

2009年論文

@zh-hant

2009年論文

@zh-hk

2009年論文

@zh-mo

2009年論文

@zh-tw

2009年论文

@wuu

name

Analysis of natural variants o ...... in cap-independent translation

@ast

Analysis of natural variants o ...... in cap-independent translation

@en

Analysis of natural variants o ...... in cap-independent translation

@nl

type

label

Analysis of natural variants o ...... in cap-independent translation

@ast

Analysis of natural variants o ...... in cap-independent translation

@en

Analysis of natural variants o ...... in cap-independent translation

@nl

prefLabel

Analysis of natural variants o ...... in cap-independent translation

@ast

Analysis of natural variants o ...... in cap-independent translation

@en

Analysis of natural variants o ...... in cap-independent translation

@nl

P1433

Q27487957-D8038ECB-0C3F-46AA-AA81-445F03012F1A

P1476

Q27487957-4D513E71-096F-487C-B9C4-731C3F68698C

P2093

Q27487957-0335277F-E3E7-462B-A527-99986463F0F4

Q27487957-4C7F4A12-6EE4-459A-B644-8BF683A5729D

Q27487957-79294796-AD9B-4788-ABB8-28012FB03A81

Q27487957-829104A5-28C1-436F-9BCC-EA2E2F4CC1CE

Q27487957-AFFE24FF-33C5-4587-82A2-4A5E988F6B01

Q27487957-B68C42C0-6FAB-4630-AE20-0582FD1FBDF5

Q27487957-DF388E63-3B8F-4F79-9C2A-B9063D9A9481

P2860

Q27487957-0AA3F55D-FFED-4C7D-8AEC-ACE66380BB96

Q27487957-0E11181C-E1DA-4915-905F-426AA2F96C1F

Q27487957-0FD26D05-7B80-4A60-9A86-4B3DB068BDD3

Q27487957-170A68E3-C446-477C-A325-4D3EA48D84F8

Q27487957-1BE0F132-FF45-4F26-B486-415487F9FCD1

Q27487957-1FF9B5BC-3F8A-4CE1-9B6D-B486125C46CA

Q27487957-20BA2F18-793D-49EB-864C-182CE5A9C5C3

Q27487957-22086581-46AF-40BB-853E-3F03B16AFCB9

Q27487957-23B960D6-D62A-4100-9AB5-21C18B74B200

Q27487957-26786E66-77B5-470D-B653-C90D5DBFF748

P304

Q27487957-A22F53AD-2687-410C-92E4-94D9EC8E6FD7

P31

Q27487957-D9E37703-74B6-43BA-B642-B06B73D197BA

P3181

Q27487957-7672722A-5E74-4C42-AE02-3542A9541220

P356

Q27487957-9E91234C-B4C3-4A68-8B30-B865B7D61404

P407

Q27487957-1CDCC015-923E-4E16-A2B7-D6E107391DAA

P433

Q27487957-1A1A049C-0187-4D16-B703-0457075869D6

P478

Q27487957-9113FC5E-1D12-42CC-8E02-5303E0953A4D

P50

Q27487957-31560DF1-8967-4720-AC88-7412F5890002

Q27487957-BD56433A-9768-4F3D-AC9E-5E221756FF2B

Q27487957-FAA6A60B-A426-4C9E-B5EB-4746153ADD05

P577

Q27487957-CBEA2660-FA58-4A08-B7D8-9D1D40EAA1F1

P5875

Q27487957-7AD3E321-37CC-43EA-86F3-7D3FF5DEC50A

P698

Q27487957-0D0BFFE9-3377-4FAF-BF46-1FF56EAE787D

P932

Q27487957-93A0A7A3-2B8B-4556-917B-BCC2C6DFF6B4

P3181

P356

P1433

Nucleic Acids Research

P1476

Analysis of natural variants o ...... in cap-independent translation

@en

P2093

Alejandro Soza

http://www.w3.org/2001/XMLSchema#string

Delphine Marsac

http://www.w3.org/2001/XMLSchema#string

María Inés Barría

http://www.w3.org/2001/XMLSchema#string

Octavio Monasterio

http://www.w3.org/2001/XMLSchema#string

Tomás Pérez-Acle

http://www.w3.org/2001/XMLSchema#string

Ursula León

http://www.w3.org/2001/XMLSchema#string

Valeska Vollrath

http://www.w3.org/2001/XMLSchema#string

P2860

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

A cellular RNA-binding protein enhances internal ribosomal entry site-dependent translation through an interaction downstream of the hepatitis C virus polyprotein initiation codon

Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction

Influence of correct secondary and tertiary RNA folding on the binding of cellular factors to the HCV IRES

Alterations to both the primary and predicted secondary structure of stem-loop IIIc of the hepatitis C virus 1b 5' untranslated region (5'UTR) lead to mutants severely defective in translation which cannot be complemented in trans by the wild-type 5

Specific interaction of eukaryotic translation initiation factor 3 with the 5' nontranslated regions of hepatitis C virus and classical swine fever virus RNAs.

Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation and IRES folding.

Comparative analysis of translation efficiencies of hepatitis C virus 5' untranslated regions among intraindividual quasispecies present in chronic infection: opposite behaviors depending on cell type

Complete translation of the hepatitis C virus genome in vitro: membranes play a critical role in the maturation of all virus proteins except for NS3.

An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus

P304

957-71

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P3181

4081934

http://www.w3.org/2001/XMLSchema#string

P356

10.1093/NAR/GKN1022

http://www.w3.org/2001/XMLSchema#string

P407

P433

3

http://www.w3.org/2001/XMLSchema#string

P478

37

http://www.w3.org/2001/XMLSchema#string

P50

Jorge Vera-Otarola

Marcelo López-Lastra

P577

2009-02-01T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

23687821

http://www.w3.org/2001/XMLSchema#string

P698

19106142

http://www.w3.org/2001/XMLSchema#string

P932

2647302

http://www.w3.org/2001/XMLSchema#string