Regulation of the Protein-Conducting Channel by a Bound Ribosome - sprookjes - yvandenbroek - TriplyDB

Regulation of the Protein-Conducting Channel by a Bound Ribosome

Regulation of the Protein-Conducting Channel by a Bound Ribosome

http://www.wikidata.org/entity/Q27658163

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BiP-mediated closing of the Sec61 channel limits Ca2+ leakage from the ER Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes Cryo-EM structure of the ribosome–SecYE complex in the membrane environment GPU-accelerated molecular modeling coming of age The role of L1 stalk-tRNA interaction in the ribosome elongation cycle Variation in the ribosome interacting loop of the Sec61α from Giardia lamblia Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways.Stereochemical errors and their implications for molecular dynamics simulations.Structural and functional profiling of the lateral gate of the Sec61 translocon xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures.A computational investigation on the connection between dynamics properties of ribosomal proteins and ribosome assembly GPU-accelerated analysis and visualization of large structures solved by molecular dynamics flexible fitting.Applications of the molecular dynamics flexible fitting method.Self-assembly of photosynthetic membranes Free-energy cost for translocon-assisted insertion of membrane proteins.Flexibility in the insulin receptor ectodomain enables docking of insulin in crystallographic conformation observed in a hormone-bound microreceptor.Free energy of nascent-chain folding in the translocon.Recognition of the regulatory nascent chain TnaC by the ribosome Structural intermediates in a model of the substrate translocation path of the bacterial glutamate transporter homologue GltPh.Cryo-electron microscopy modeling by the molecular dynamics flexible fitting method.Mechanisms of SecM-mediated stalling in the ribosome Bacterial protein translocation requires only one copy of the SecY complex in vivo.Accessing gap-junction channel structure-function relationships through molecular modeling and simulations GENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations.Single-molecule nanometry for biological physics.Reconciling the roles of kinetic and thermodynamic factors in membrane-protein insertion.Key intermolecular interactions in the E. coli 70S ribosome revealed by coarse-grained analysis.Advances in the molecular dynamics flexible fitting method for cryo-EM modeling.Computational studies of molecular machines: the ribosome.Exploring transmembrane diffusion pathways with molecular dynamics More than the sum of its parts: coarse-grained peptide-lipid interactions from a simple cross-parametrization.Molecular dynamics simulations of protein dynamics and their relevance to drug discovery.The Sec translocon mediated protein transport in prokaryotes and eukaryotes.Protein transport into the human ER and related diseases, Sec61-channelopathies.Use of restrained molecular dynamics to predict the conformations of phosphorylated receiver domains in two-component signaling systems.The bacterial translocon SecYEG opens upon ribosome binding.Enhanced sampling and overfitting analyses in structural refinement of nucleic acids into electron microscopy maps YidC occupies the lateral gate of the SecYEG translocon and is sequentially displaced by a nascent membrane protein.Using enhanced sampling and structural restraints to refine atomic structures into low-resolution electron microscopy maps.Competitive binding of the SecA ATPase and ribosomes to the SecYEG translocon.

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P2860

Regulation of the Protein-Conducting Channel by a Bound Ribosome

http://www.wikidata.org/entity/Q27658163

description

2009 nî lūn-bûn

@nan

2009 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

@zh-hk

2009年論文

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2009年論文

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2009年论文

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name

Regulation of the Protein-Conducting Channel by a Bound Ribosome

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Regulation of the Protein-Conducting Channel by a Bound Ribosome

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Regulation of the Protein-Conducting Channel by a Bound Ribosome

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type

label

Regulation of the Protein-Conducting Channel by a Bound Ribosome

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Regulation of the Protein-Conducting Channel by a Bound Ribosome

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Regulation of the Protein-Conducting Channel by a Bound Ribosome

@nl

prefLabel

Regulation of the Protein-Conducting Channel by a Bound Ribosome

@ast

Regulation of the Protein-Conducting Channel by a Bound Ribosome

@en

Regulation of the Protein-Conducting Channel by a Bound Ribosome

@nl

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P356

J.STR.2009.09.010

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P1476

Regulation of the Protein-Conducting Channel by a Bound Ribosome

@en

P2093

Eduard Schreiner

http://www.w3.org/2001/XMLSchema#string

James Gumbart

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Leonardo G Trabuco

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P2860

Structure of the E. coli protein-conducting channel bound to a translating ribosome

Electrostatics of nanosystems: application to microtubules and the ribosome

The beta subunit of the Sec61 complex facilitates cotranslational protein transport and interacts with the signal peptidase during translocation

X-ray structure of a protein-conducting channel

Ribosome binding of a single copy of the SecY complex: implications for protein translocation

Single Copies of Sec61 and TRAP Associate with a Nontranslating Mammalian Ribosome

Structure of a complex of the ATPase SecA and the protein-translocation channel

Conformational transition of Sec machinery inferred from bacterial SecYE structures

Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis

All-atom empirical potential for molecular modeling and dynamics studies of proteins

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1453-64

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scholarly article

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10.1016/J.STR.2009.09.010

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11

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17

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Elizabeth Villa

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2009-11-11T00:00:00Z

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38089456

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19913480

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structural biology

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2778611

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