Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists - sprookjes - yvandenbroek - TriplyDB

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

http://www.wikidata.org/entity/Q28131785

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Identification of novel targets for miR-29a using miRNA proteomics Transcript length bias in RNA-seq data confounds systems biology Mining the Gene Wiki for functional genomic knowledge Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing Molecular strategies of the Caenorhabditis elegans dauer larva to survive extreme desiccation Musashi2 is required for the self-renewal and pluripotency of embryonic stem cells Transcriptome analysis of germinating maize kernels exposed to smoke-water and the active compound KAR1 Chronic parasitization by Nosema microsporidia causes global expression changes in core nutritional, metabolic and behavioral pathways in honey bee workers (Apis mellifera)An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2 Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens.Proteome-wide lysine acetylation in cortical astrocytes and alterations that occur during infection with brain parasite Toxoplasma gondii Temporal specification and bilaterality of human neocortical topographic gene expression Temporal changes in rat liver gene expression after acute cadmium and chromium exposure Statistical assessment of crosstalk enrichment between gene groups in biological networks P-values in genomics: apparent precision masks high uncertainty Lysine glutarylation is a protein posttranslational modification regulated by SIRT5 A high-coverage shRNA screen identifies TMEM129 as an E3 ligase involved in ER-associated protein degradation Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions DYX1C1 is required for axonemal dynein assembly and ciliary motility Brain-derived neurotrophic factor signaling rewrites the glucocorticoid transcriptome via glucocorticoid receptor phosphorylation Rare coding variants in the phospholipase D3 gene confer risk for Alzheimer's disease Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase Ankrd2 is a modulator of NF-κB-mediated inflammatory responses during muscle differentiation Structure homology and interaction redundancy for discovering virus-host protein interactions Protein microarray characterization of the S-nitrosoproteome Identification and comparative analysis of hepatitis C virus-host cell protein interactions SFMBT1 functions with LSD1 to regulate expression of canonical histone genes and chromatin-related factors sRNAs and the virulence of Salmonella enterica serovar Typhimurium Bioinformatics and systems biology of the lipidome Neuronal Elav-like (Hu) proteins regulate RNA splicing and abundance to control glutamate levels and neuronal excitability.Genome-wide characterization of adaptation and speciation in tiger swallowtail butterflies using de novo transcriptome assemblies Pathway Commons, a web resource for biological pathway data Immune modulation during latent herpesvirus infection Ontogeny of erythroid gene expression Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia A CRISPR screen defines a signal peptide processing pathway required by flaviviruses Strong purifying selection at synonymous sites in D. melanogaster Comparative Transcriptomics Reveals Key Gene Expression Differences between Diapausing and Non-Diapausing Adults of Culex pipiens Establishing an analytic pipeline for genome-wide DNA methylation Clinical proteomics of enervated neurons

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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

http://www.wikidata.org/entity/Q28131785

description

2009 nî lūn-bûn

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2009 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2009 թվականի հունվարին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年论文

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name

Bioinformatics enrichment tool ...... l analysis of large gene lists

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Bioinformatics enrichment tool ...... l analysis of large gene lists

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Bioinformatics enrichment tool ...... l analysis of large gene lists

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type

label

Bioinformatics enrichment tool ...... l analysis of large gene lists

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Bioinformatics enrichment tool ...... l analysis of large gene lists

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Bioinformatics enrichment tool ...... l analysis of large gene lists

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Bioinformatics enrichment tool ...... l analysis of large gene lists

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Bioinformatics enrichment tool ...... l analysis of large gene lists

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Bioinformatics enrichment tool ...... l analysis of large gene lists

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Nucleic Acids Research

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Bioinformatics enrichment tool ...... l analysis of large gene lists

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Brad T Sherman

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Da Wei Huang

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P2860

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis

Gene ontology: tool for the unification of biology

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Identifying biological themes within lists of genes with EASE

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists

SerbGO: searching for the best GO tool

Entrez Gene: gene-centered information at NCBI

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists

GOToolBox: functional analysis of gene datasets based on Gene Ontology

FunSpec: a web-based cluster interpreter for yeast.

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1-13

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scholarly article

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92083

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10.1093/NAR/GKN923

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1

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37

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Richard A. Lempicki

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23497215

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19033363

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2615629

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