Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark
about
A structure-based benchmark for protein-protein binding affinityMolecular docking as a popular tool in drug design, an in silico travelComputational prediction of protein interfaces: A review of data driven methodsSurfing the Protein-Protein Interaction Surface Using Docking Methods: Application to the Design of PPI InhibitorsATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM mapsProtein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary informationThe interaction of RNA helicase DDX3 with HIV-1 Rev-CRM1-RanGTP complex during the HIV replication cycleProtein social behavior makes a stronger signal for partner identification than surface geometryDifferent combinations of atomic interactions predict protein-small molecule and protein-DNA/RNA affinities with similar accuracyAccurate Prediction of Docked Protein Structure Similarity.A benchmark testing ground for integrating homology modeling and protein docking.Mapping monomeric threading to protein-protein structure prediction.Flexibility and binding affinity in protein-ligand, protein-protein and multi-component protein interactions: limitations of current computational approaches.Antimicrobial and efflux pump inhibitory activity of caffeoylquinic acids from Artemisia absinthium against gram-positive pathogenic bacteriaA collaborative filtering approach for protein-protein docking scoring functions.Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.Arbitrary protein-protein docking targets biologically relevant interfaces.Alternative protein-protein interfaces are frequent exceptions.Estrogen receptor α/β-cofactor motif interactions; interplay of tyrosine 537/488 phosphorylation and LXXLL motifs.Modeling amyloid-beta as homogeneous dodecamers and in complex with cellular prion protein.Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.Towards the prediction of protein interaction partners using physical dockingNew benchmark metrics for protein-protein docking methods.Restricted sidechain plasticity in the structures of native proteins and complexes.The scoring of poses in protein-protein docking: current capabilities and future directionsStructural basis for assembly and function of the Nup82 complex in the nuclear pore scaffold.Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins.HADDOCK(2P2I): a biophysical model for predicting the binding affinity of protein-protein interaction inhibitors.A conservation and biophysics guided stochastic approach to refining docked multimeric proteins.SymmRef: a flexible refinement method for symmetric multimers.Predicting the Impact of Missense Mutations on Protein-Protein Binding Affinity.Discovery of binding proteins for a protein target using protein-protein docking-based virtual screening.MDcons: Intermolecular contact maps as a tool to analyze the interface of protein complexes from molecular dynamics trajectoriesHow structure defines affinity in protein-protein interactions.Protein-protein docking with dynamic residue protonation statesDeveloping a comparative docking protocol for the prediction of peptide selectivity profiles: investigation of potassium channel toxins.Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes.CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.Improving the accuracy of high-throughput protein-protein affinity prediction may require better training dataMolecular Mechanism and Energy Basis of Conformational Diversity of Antibody SPE7 Revealed by Molecular Dynamics Simulation and Principal Component Analysis
P2860
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P2860
Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark
description
2010 nî lūn-bûn
@nan
2010 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
Are scoring functions in prote ...... vel binding affinity benchmark
@ast
Are scoring functions in prote ...... vel binding affinity benchmark
@en
Are scoring functions in prote ...... vel binding affinity benchmark
@nl
type
label
Are scoring functions in prote ...... vel binding affinity benchmark
@ast
Are scoring functions in prote ...... vel binding affinity benchmark
@en
Are scoring functions in prote ...... vel binding affinity benchmark
@nl
prefLabel
Are scoring functions in prote ...... vel binding affinity benchmark
@ast
Are scoring functions in prote ...... vel binding affinity benchmark
@en
Are scoring functions in prote ...... vel binding affinity benchmark
@nl
P3181
P356
P1476
Are scoring functions in prote ...... vel binding affinity benchmark
@en
P304
P3181
P356
10.1021/PR9009854
P577
2010-05-07T00:00:00Z