PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins - sprookjes - yvandenbroek - TriplyDB

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

http://www.wikidata.org/entity/Q28288331

about

N6-methyladenosine-dependent regulation of messenger RNA stability iCLIP: protein-RNA interactions at nucleotide resolution RNA-Seq methods for transcriptome analysis Tiny giants of gene regulation: experimental strategies for microRNA functional studies Stem Cell Ribonomics: RNA-Binding Proteins and Gene Networks in Stem Cell Differentiation MECHANISMS IN ENDOCRINOLOGY: Alternative splicing: the new frontier in diabetes research Unveiling the hidden function of long non-coding RNA by identifying its major partner-protein Decoding mechanisms by which silent codon changes influence protein biogenesis and function Regulation of bacterial virulence by Csr (Rsm) systems The "Observer Effect" in genome-wide surveys of protein-RNA interactions Metabolite sensing in eukaryotic mRNA biology NSUN4 is a dual function mitochondrial protein required for both methylation of 12S rRNA and coordination of mitoribosomal assembly Gemin5 Binds to the Survival Motor Neuron mRNA to Regulate SMN Expression HNRNPA2B1 Is a Mediator of m(6)A-Dependent Nuclear RNA Processing Events Genome-wide mapping of yeast RNA polymerase II termination Multiple conformations are a conserved and regulatory feature of the RB1 5' UTR Both Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution.The PSI-U1 snRNP interaction regulates male mating behavior in Drosophila.A model-based approach to identify binding sites in CLIP-Seq data.MixMir: microRNA motif discovery from gene expression data using mixed linear models.Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.Assessing Computational Steps for CLIP-Seq Data Analysis.De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function.The Human CCHC-type Zinc Finger Nucleic Acid-Binding Protein Binds G-Rich Elements in Target mRNA Coding Sequences and Promotes Translation.RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases.Depletion of the Trypanosome Pumilio domain protein PUF2 or of some other essential proteins causes transcriptome changes related to coding region length MicroRNAs MiR-17, MiR-20a, and MiR-106b act in concert to modulate E2F activity on cell cycle arrest during neuronal lineage differentiation of USSC.Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets RNA sequencing: from tag-based profiling to resolving complete transcript structure.Predicting RNA-protein interactions using only sequence information."Seed-Milarity" confers to hsa-miR-210 and hsa-miR-147b similar functional activity.The varied roles of nuclear argonaute-small RNA complexes and avenues for therapy.In vivo proximity labeling for the detection of protein-protein and protein-RNA interactions.ELAVL1 modulates transcriptome-wide miRNA binding in murine macrophages RNA-binding proteins in pluripotency, differentiation, and reprogramming.RNA polymerase II transcription elongation control.Molecular network analysis enhances understanding of the biology of mental disorders.The trypanosome Pumilio domain protein PUF5.RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs.

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PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

http://www.wikidata.org/entity/Q28288331

description

2010 nî lūn-bûn

@nan

2010 թուականի Յուլիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հուլիսին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

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2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

@zh-tw

2010年论文

@wuu

name

PAR-CliP--a method to identify ...... sites of RNA binding proteins

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PAR-CliP--a method to identify ...... sites of RNA binding proteins

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PAR-CliP--a method to identify ...... sites of RNA binding proteins

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P1433

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P2860

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P3181

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P1433

Journal of Visualized Experiments

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PAR-CliP--a method to identify ...... sites of RNA binding proteins

@en

P2093

Alexander Ulrich

http://www.w3.org/2001/XMLSchema#string

Andrea Rothballer

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Anna-Carina Jungkamp

http://www.w3.org/2001/XMLSchema#string

Greg S Wardle

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Lukas Burger

http://www.w3.org/2001/XMLSchema#string

Manuel Ascano

http://www.w3.org/2001/XMLSchema#string

Mohsen Khorshid

http://www.w3.org/2001/XMLSchema#string

Philipp Berninger

http://www.w3.org/2001/XMLSchema#string

Scott Dewell

http://www.w3.org/2001/XMLSchema#string

P2860

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

CLIP identifies Nova-regulated RNA networks in the brain

Characterization of heterogeneous nuclear RNA-protein complexes in vivo with monoclonal antibodies

RNA regulons: coordination of post-transcriptional events

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scholarly article

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1831596

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P356

10.3791/2034

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P433

41

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P50

Mihaela Zavolan

Markus Landthaler

Mathias Munschauer

P577

2010-07-02T00:00:00Z

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45275662

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20644507

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3156069

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