Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes - sprookjes - yvandenbroek - TriplyDB

Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes

Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes

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The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum Forward Individualized Medicine from Personal Genomes to Interactomes Physiologically Shrinking the Solution Space of a Saccharomyces cerevisiae Genome-Scale Model Suggests the Role of the Metabolic Network in Shaping Gene Expression Noise Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism Adaptation to different types of stress converge on mitochondrial metabolism Fluxomics - connecting ‘omics analysis and phenotypes Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens SBW25 through genome-scale metabolic modeling Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae.BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data.SteadyCom: Predicting microbial abundances while ensuring community stability Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica.Metabolic and transcriptional regulatory mechanisms underlying the anoxic adaptation of rice coleoptile.Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics The common ground of genomics and systems biology.Regulation of amino-acid metabolism controls flux to lipid accumulation in Yarrowia lipolytica.Systems biology of the qa gene cluster in Neurospora crassa Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods Network context and selection in the evolution to enzyme specificity.Integration of clinical data with a genome-scale metabolic model of the human adipocyte.Biofuels. Altered sterol composition renders yeast thermotolerant.Elimination of thermodynamically infeasible loops in steady-state metabolic models Phenotype-based cell-specific metabolic modeling reveals metabolic liabilities of cancer.Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling.Integration of a constraint-based metabolic model of Brassica napus developing seeds with (13)C-metabolic flux analysis.Understanding the interactions between bacteria in the human gut through metabolic modeling Inferring transcription factor collaborations in gene regulatory networks Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models.Sequencing and beyond: integrating molecular 'omics' for microbial community profiling.The gut microbiota modulates host amino acid and glutathione metabolism in mice Modeling cancer metabolism on a genome scale.Cell scale host-pathogen modeling: another branch in the evolution of constraint-based methods.Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato.Thermotolerant yeasts selected by adaptive evolution express heat stress response at 30 °C.Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome.IDENTIFYING CANCER SPECIFIC METABOLIC SIGNATURES USING CONSTRAINT-BASED MODELS.Genome-Scale Reconstruction of the Human Astrocyte Metabolic Network.Toward systems metabolic engineering of Aspergillus and Pichia species for the production of chemicals and biofuels.Genome-scale modeling of human metabolism - a systems biology approach.

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P2860

Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes

http://www.wikidata.org/entity/Q28474850

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2010 nî lūn-bûn

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2010 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2010 թվականի հուլիսին հրատարակված գիտական հոդված

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2010年の論文

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GCN4, a eukaryotic transcriptional activator protein, binds as a dimer to target DNA

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets

Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression.

Correlation between protein and mRNA abundance in yeast

Analysis of optimality in natural and perturbed metabolic networks

Global organization of metabolic fluxes in the bacterium Escherichia coli

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

Genome-scale models of microbial cells: evaluating the consequences of constraints

Integration of metabolome data with metabolic networks reveals reporter reactions.

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