Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data - sprookjes - yvandenbroek - TriplyDB

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

http://www.wikidata.org/entity/Q29394572

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Challenges and Opportunities for T-Cell-Mediated Strategies to Eliminate HIV Reservoirs The changing face of pathogen discovery and surveillance Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature?Ancestral Reconstruction An evaluation of phylogenetic methods for reconstructing transmitted HIV variants using longitudinal clonal HIV sequence data.HIV-1 tropism dynamics and phylogenetic analysis from longitudinal ultra-deep sequencing data of CCR5- and CXCR4-using variants.Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection Emergence of CXCR4-tropic HIV-1 variants followed by rapid disease progression in hemophiliac slow progressors.Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations.Measurably evolving pathogens in the genomic era Cohort Profile: HAART Observational Medical Evaluation and Research (HOMER) cohort.A likelihood approach to estimate the number of co-infections.Incomplete APOBEC3G/F Neutralization by HIV-1 Vif Mutants Facilitates the Genetic Evolution from CCR5 to CXCR4 Usage.Evolution of coreceptor utilization to escape CCR5 antagonist therapy.Differential evolution of a CXCR4-using HIV-1 strain in CCR5wt/wt and CCR5∆32/∆32 hosts revealed by longitudinal deep sequencing and phylogenetic reconstruction.Pairwise diversity and tMRCA as potential markers for HIV infection recency The Pace of Co-receptor Tropism Switch in HIV-1 Infected Individuals after Recent Infection.High-Sequence Diversity and Rapid Virus Turnover Contribute to Higher Rates of Coreceptor Switching in Treatment-Experienced Subjects with HIV-1 Viremia.Adaptation on a genomic scale.Fitness valleys constrain HIV-1's adaptation to its secondary chemokine coreceptor.Large and finite sample properties of a maximum-likelihood estimator for multiplicity of infection.Phylogenetic approach to recover integration dates of latent HIV sequences within-host A majority of HIV persistence during antiretroviral therapy is due to infected cell proliferation

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Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

http://www.wikidata.org/entity/Q29394572

description

2012 nî lūn-bûn

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2012 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

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Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

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Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

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Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

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Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

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Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

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PLOS Computational Biology

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Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

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Angélique B. van 't Wout

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Art F. Y. Poon

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Diana Edo-Matas

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Evelien M. Bunnik

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Hanneke Schuitemaker

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P. Richard Harrigan

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Relaxed phylogenetics and dating with confidence

MUSCLE: multiple sequence alignment with high accuracy and high throughput

BEAST: Bayesian evolutionary analysis by sampling trees.

Evolutionary trees from DNA sequences: a maximum likelihood approach

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

A fast algorithm for joint reconstruction of ancestral amino acid sequences

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

Not so different after all: a comparison of methods for detecting amino acid sites under selection

The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach

The impact of the syncytium-inducing phenotype of human immunodeficiency virus on disease progression

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