Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 - sprookjes - yvandenbroek - TriplyDB

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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Heterogeneous Effects of Direct Hypoxia Pathway Activation in Kidney Cancer Type III Interferons Produced by Human Placental Trophoblasts Confer Protection against Zika Virus Infection Comparative analysis of viral RNA signatures on different RIG-I-like receptors Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo The second decade of 3C technologies: detailed insights into nuclear organization Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine Transcriptome Analysis in Domesticated Species: Challenges and Strategies Using "Omics" and Integrated Multi-Omics Approaches to Guide Probiotic Selection to Mitigate Chytridiomycosis and Other Emerging Infectious Diseases Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes Differential Expression Analysis for RNA-Seq: An Overview of Statistical Methods and Computational Software Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis Advanced Applications of RNA Sequencing and Challenges Assessing Dissimilarity Measures for Sample-Based Hierarchical Clustering of RNA Sequencing Data Using Plasmode Datasets Gender and Obesity Specific MicroRNA Expression in Adipose Tissue from Lean and Obese Pigs Shape analysis of high-throughput transcriptomics experiment data Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene Transcriptome analysis of Phoenix canariensis Chabaud in response to Rhynchophorus ferrugineus Olivier attacks.Identification of Chemical Inhibitors of β-Catenin-Driven Liver Tumorigenesis in Zebrafish Combinatorial gene regulation by modulation of relative pulse timing.Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b.Inferential considerations for low-count RNA-seq transcripts: a case study on the dominant prairie grass Andropogon gerardii.The neurotranscriptome of the Aedes aegypti mosquito Dietary intake alters gene expression in colon tissue: possible underlying mechanism for the influence of diet on disease.Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss.Characterization of Microbial Mat Microbiomes in the Modern Thrombolite Ecosystem of Lake Clifton, Western Australia Using Shotgun Metagenomics.Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure.Multimodal stimulus coding by a gustatory sensory neuron in Drosophila larvae.The BTG4 and CAF1 complex prevents the spontaneous activation of eggs by deadenylating maternal mRNAs.RNA-Seq reveals 10 novel promising candidate genes affecting milk protein concentration in the Chinese Holstein population.Modeling Dengue Virus-Hepatic Cell Interactions Using Human Pluripotent Stem Cell-Derived Hepatocyte-like Cells Visualization of proteomics data using R and bioconductor A survey of best practices for RNA-seq data analysis Single-Cell Transcriptomics Bioinformatics and Computational Challenges Genome-Wide Transcriptional Regulation Mediated by Biochemically Distinct SWI/SNF Complexes Chromatin and extracellular vesicle associated sperm RNAs The impact of oil spill to lung health--Insights from an RNA-seq study of human airway epithelial cells Phenotype and Tissue Expression as a Function of Genetic Risk in Polycystic Ovary Syndrome DNA Methylation Signatures of the Plant Chromomethyltransferases Genome-wide discovery of drug-dependent human liver regulatory elements Overview of a surface-ripened cheese community functioning by meta-omics analyses

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P2860

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

http://www.wikidata.org/entity/Q29547403

description

2014 nî lūn-bûn

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2014 թուականին հրատարակուած գիտական յօդուած

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2014 թվականին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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name

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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type

label

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

@ast

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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prefLabel

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

@ast

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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Differential expression analysis for sequence count data

Bioconductor: open software development for computational biology and bioinformatics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Understanding mechanisms underlying human gene expression variation with RNA sequencing

HTSeq--a Python framework to work with high-throughput sequencing data

Differential analysis of gene regulation at transcript resolution with RNA-seq

Regularization Paths for Generalized Linear Models via Coordinate Descent

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