UCHIME improves sensitivity and speed of chimera detection - sprookjes - yvandenbroek - TriplyDB

UCHIME improves sensitivity and speed of chimera detection

UCHIME improves sensitivity and speed of chimera detection

http://www.wikidata.org/entity/Q29547664

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Bacterial community development in experimental gingivitis A multi-omic systems-based approach reveals metabolic markers of bacterial vaginosis and insight into the disease Network analysis reveals ecological links between N-fixing bacteria and wood-decaying fungi Low incidence of spontaneous type 1 diabetes in non-obese diabetic mice raised on gluten-free diets is associated with changes in the intestinal microbiome Functional similarities between pigeon 'milk' and mammalian milk: induction of immune gene expression and modification of the microbiota The murine lung microbiome in relation to the intestinal and vaginal bacterial communities Characterization and comparison of bacterial communities in benign vocal fold lesions.Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi Cloning of ribosomal ITS PCR products creates frequent, non-random chimeric sequences – a test involving heterozygotes between Gymnopus dichrous taxa I and II Complex archaea that bridge the gap between prokaryotes and eukaryotes Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota)Ericaceous plant-fungus network in a harsh alpine-subalpine environment Structural robustness of the gut mucosal microbiota is associated with Crohn's disease remission after surgery Considerations For Optimizing Microbiome Analysis Using a Marker Gene Censusing marine eukaryotic diversity in the twenty-first century The A, C, G, and T of Genome Assembly Tracking Strains in the Microbiome: Insights from Metagenomics and Models Diversity and Composition of Bacterial Community in Soils and Lake Sediments from an Arctic Lake Area Library construction for next-generation sequencing: overviews and challenges.Reference databases for taxonomic assignment in metagenomics Ancient and modern environmental DNA H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups.The musk chemical composition and microbiota of Chinese forest musk deer males Red fluorescent biofilm: the thick, the old, and the cariogenic The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model Methane-carbon flow into the benthic food web at cold seeps--a case study from the Costa Rica subduction zone Next generation sequencing data of a defined microbial mock community.Intestinal microbiota composition of interleukin-10 deficient C57BL/6J mice and susceptibility to Helicobacter hepaticus-induced colitis A possible link between food and mood: dietary impact on gut microbiota and behavior in BALB/c mice Carbohydrate-Free Peach (Prunus persica) and Plum (Prunus salicina) [corrected] Juice Affects Fecal Microbial Ecology in an Obese Animal Model Protistan community analysis: key findings of a large-scale molecular sampling.A bacterial filter protects and structures the gut microbiome of an insect.Bacterial community profiling of milk samples as a means to understand culture-negative bovine clinical mastitis Diet Diversity Is Associated with Beta but not Alpha Diversity of Pika Gut Microbiota Distribution and Composition of Thiotrophic Mats in the Hypoxic Zone of the Black Sea (150-170 m Water Depth, Crimea Margin)The Vitamin B1 and B12 Required by the Marine Dinoflagellate Lingulodinium polyedrum Can be Provided by its Associated Bacterial Community in Culture Relationship between Milk Microbiota, Bacterial Load, Macronutrients, and Human Cells during Lactation Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure.The Effects of Bowel Preparation on Microbiota-Related Metrics Differ in Health and in Inflammatory Bowel Disease and for the Mucosal and Luminal Microbiota Compartments Escherichia coli O157:H7 super-shedder and non-shedder feedlot steers harbour distinct fecal bacterial communities

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P2860

UCHIME improves sensitivity and speed of chimera detection

http://www.wikidata.org/entity/Q29547664

description

2011 nî lūn-bûn

@nan

2011 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի օգոստոսին հրատարակված գիտական հոդված

@hy

2011年の論文

@ja

2011年論文

@yue

2011年論文

@zh-hant

2011年論文

@zh-hk

2011年論文

@zh-mo

2011年論文

@zh-tw

2011年论文

@wuu

name

UCHIME improves sensitivity and speed of chimera detection

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UCHIME improves sensitivity and speed of chimera detection

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type

label

UCHIME improves sensitivity and speed of chimera detection

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UCHIME improves sensitivity and speed of chimera detection

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prefLabel

UCHIME improves sensitivity and speed of chimera detection

@ast

UCHIME improves sensitivity and speed of chimera detection

@en

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UCHIME improves sensitivity and speed of chimera detection

@en

P2093

Clemente JC

http://www.w3.org/2001/XMLSchema#string

Edgar RC

http://www.w3.org/2001/XMLSchema#string

Haas BJ

http://www.w3.org/2001/XMLSchema#string

Knight R

http://www.w3.org/2001/XMLSchema#string

Quince C

http://www.w3.org/2001/XMLSchema#string

P2860

Removing noise from pyrosequenced amplicons

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

Recent developments in the MAFFT multiple sequence alignment program

Search and clustering orders of magnitude faster than BLAST

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'

A new version of the RDP (Ribosomal Database Project).

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.

PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

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2194-200

http://www.w3.org/2001/XMLSchema#string

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scholarly article

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16041

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10.1093/BIOINFORMATICS/BTR381

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16

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27

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2011-08-15T00:00:00Z

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51245492

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21700674

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3150044

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