Modeling protein structure at near atomic resolutions with Gorgon. - sprookjes - yvandenbroek - TriplyDB

Modeling protein structure at near atomic resolutions with Gorgon.

Modeling protein structure at near atomic resolutions with Gorgon.

http://www.wikidata.org/entity/Q30399373

about

Three dimensional electron microscopy and in silico tools for macromolecular structure determination 4.4 Å cryo-EM structure of an enveloped alphavirus Venezuelan equine encephalitis virus Cryo-EM model validation using independent map reconstructions Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling Cryo-EM near-atomic structure of a dsRNA fungal virus shows ancient structural motifs preserved in the dsRNA viral lineage.Protruding knob-like proteins violate local symmetries in an icosahedral marine virus.Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps.De novo protein structure determination from near-atomic-resolution cryo-EM maps High resolution single particle refinement in EMAN2.1.Comparison of an Atomic Model and Its Cryo-EM Image at the Central Axis of a Helix PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps.Comparing an Atomic Model or Structure to a Corresponding Cryo-electron Microscopy Image at the Central Axis of a Helix.EM-fold: de novo atomic-detail protein structure determination from medium-resolution density maps.Gorgon and pathwalking: macromolecular modeling tools for subnanometer resolution density maps.Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithm.Improved efficiency in cryo-EM secondary structure topology determination from inaccurate data.A newly isolated reovirus has the simplest genomic and structural organization of any reovirus.Estimating loop length from CryoEM images at medium resolutions.Constructing and validating initial Cα models from subnanometer resolution density maps with pathwalking Comparison of Segger and other methods for segmentation and rigid-body docking of molecular components in cryo-EM density maps Gating machinery of InsP3R channels revealed by electron cryomicroscopy Tools for Model Building and Optimization into Near-Atomic Resolution Electron Cryo-Microscopy Density Maps.Heterodimers as the Structural Unit of the T=1 Capsid of the Fungal Double-Stranded RNA Rosellinia necatrix Quadrivirus 1.Reconstructing virus structures from nanometer to near-atomic resolutions with cryo-electron microscopy and tomography.Macromolecular structure modeling from 3D EM using VolRover 2.0.RosettaES: a sampling strategy enabling automated interpretation of difficult cryo-EM maps.An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images.Flexible Fitting of Atomic Models into Cryo-EM Density Maps Guided by Helix Correspondences.EMBuilder: A Template Matching-based Automatic Model-building Program for High-resolution Cryo-Electron Microscopy Maps.A machine learning approach for the identification of protein secondary structure elements from electron cryo-microscopy density maps.Real-space refinement with DireX: from global fitting to side-chain improvements.Cryphonectria nitschkei virus 1 structure shows that the capsid protein of chrysoviruses is a duplicated helix-rich fold conserved in fungal double-stranded RNA viruses The 2010 cryo-EM modeling challenge.CryoEM-based hybrid modeling approaches for structure determination.Structures of transcription pre-initiation complex with TFIIH and Mediator.Deep Convolutional Neural Networks for Detecting Secondary Structures in Protein Density Maps from Cryo-Electron Microscopy.CHALLENGES IN MATCHING SECONDARY STRUCTURES IN CRYO-EM: AN EXPLORATION.

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P2860

Modeling protein structure at near atomic resolutions with Gorgon.

http://www.wikidata.org/entity/Q30399373

description

2011 nî lūn-bûn

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2011 թուականի Փետրուարին հրատարակուած գիտական յօդուած

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2011 թվականի փետրվարին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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Modeling protein structure at near atomic resolutions with Gorgon.

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Modeling protein structure at near atomic resolutions with Gorgon.

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Modeling protein structure at near atomic resolutions with Gorgon.

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Modeling protein structure at near atomic resolutions with Gorgon.

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Modeling protein structure at near atomic resolutions with Gorgon.

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Modeling protein structure at near atomic resolutions with Gorgon.

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J.JSB.2011.01.015

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Journal of Structural Biology

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Modeling protein structure at near atomic resolutions with Gorgon.

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P2093

Austin Abrams

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Corey F Hryc

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Matthew L Baker

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Michael P Marsh

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Ross A Coleman

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Sasakthi S Abeysinghe

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Stephen Schuh

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Tao Ju

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Troy Ruths

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P2860

Towards atomic resolution structural determination by single-particle cryo-electron microscopy

3.3 A cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry.

Mechanism of folding chamber closure in a group II chaperonin

Structural determinants of water permeation through aquaporin-1

Atomic structure of the major capsid protein of rotavirus: implications for the architecture of the virion

The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins

De novo backbone trace of GroEL from single particle electron cryomicroscopy

3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy

GTPase activation of elongation factor EF-Tu by the ribosome during decoding.

Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM

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360-373

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10.1016/J.JSB.2011.01.015

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2

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174

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2011-02-04T00:00:00Z

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49812485

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21296162

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3078171

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