Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules - sprookjes - yvandenbroek - TriplyDB

Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules

Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules

http://www.wikidata.org/entity/Q33318085

about

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor Circadian Control of Global Transcription Circadian regulation of abiotic stress tolerance in plants Genomic basis for light control of plant development Complexity in the wiring and regulation of plant circadian networks The analytical landscape of static and temporal dynamics in transcriptome data PIFs get BRright: PHYTOCHROME INTERACTING FACTORs as integrators of light and hormonal signals Wheels within wheels: the plant circadian system Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana Temporal aspects of copper homeostasis and its crosstalk with hormones Circadian rhythms of sense and antisense transcription in sugarcane, a highly polyploid crop Unstable transcripts in Arabidopsis allotetraploids are associated with nonadditive gene expression in response to abiotic and biotic stresses Maize global transcriptomics reveals pervasive leaf diurnal rhythms but rhythms in developing ears are largely limited to the core oscillator A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress Systematic identification of functional plant modules through the integration of complementary data sources Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis.Improving the accuracy of expression data analysis in time course experiments using resampling Cycling of clock genes entrained to the solar rhythm enables plants to tell time: data from Arabidopsis.Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation.The characterisation of AOP2: a gene associated with the biosynthesis of aliphatic alkenyl glucosinolates in Arabidopsis thaliana.Frequency-based time-series gene expression recomposition using PRIISM.Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress.BRANCHED1 interacts with FLOWERING LOCUS T to repress the floral transition of the axillary meristems in Arabidopsis.Diurnal and circadian rhythms in the tomato transcriptome and their modulation by cryptochrome photoreceptors.Growth control: brassinosteroid activity gets context.The dynamics of FLOWERING LOCUS T expression encodes long-day information.NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering A morning-specific phytohormone gene expression program underlying rhythmic plant growth FORCA, a promoter element that responds to crosstalk between defense and light signaling.Light induced changes in protein expression and uniform regulation of transcription in the thylakoid lumen of Arabidopsis thaliana.Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles.A modern circadian clock in the common angiosperm ancestor of monocots and eudicots.Circadian oscillation of starch branching enzyme gene expression in the sorghum endosperm Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis.AGROBEST: an efficient Agrobacterium-mediated transient expression method for versatile gene function analyses in Arabidopsis seedlings.An expanding universe of circadian networks in higher plants.Transcriptome phase distribution analysis reveals diurnal regulated biological processes and key pathways in rice flag leaves and seedling leaves

P2860

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P2860

Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules

http://www.wikidata.org/entity/Q33318085

description

2008 nî lūn-bûn

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2008 թուականի Փետրուարին հրատարակուած գիտական յօդուած

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2008 թվականի փետրվարին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年论文

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name

Network discovery pipeline elu ...... pecific cis-regulatory modules

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Network discovery pipeline elu ...... pecific cis-regulatory modules

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Network discovery pipeline elu ...... ecific cis-regulatory modules.

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Network discovery pipeline elu ...... pecific cis-regulatory modules

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Network discovery pipeline elu ...... pecific cis-regulatory modules

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Network discovery pipeline elu ...... ecific cis-regulatory modules.

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Network discovery pipeline elu ...... pecific cis-regulatory modules

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Network discovery pipeline elu ...... pecific cis-regulatory modules

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Network discovery pipeline elu ...... ecific cis-regulatory modules.

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JOURNAL.PGEN.0040014

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Network discovery pipeline elu ...... pecific cis-regulatory modules

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Christopher M Sullivan

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Connor McEntee

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Fangxin Hong

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Jonathan D Trout

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Marcelo Yanovsky

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Rongkun Shen

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Samuel P Hazen

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Steve A Kay

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Todd C Mockler

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P2860

Coupling of human circadian and cell cycles by the timeless protein.

Plant circadian rhythms

Statistical significance for genomewide studies

Temperature regulates transcription in the zebrafish circadian clock.

A genomic perspective on protein families

System-level identification of transcriptional circuits underlying mammalian circadian clocks.

The Adaptive Value of Circadian Clocks

Molecular basis of seasonal time measurement in Arabidopsis

Coordinated transcription of key pathways in the mouse by the circadian clock

Circadian regulator CLOCK is a histone acetyltransferase

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e14

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10.1371/JOURNAL.PGEN.0040014

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2

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4

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Ghislain Breton

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2222925

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