about
MD Simulations of tRNA and Aminoacyl-tRNA Synthetases: Dynamics, Folding, Binding, and AllosteryMagnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch.Structure based design of protein linkers for zinc finger nuclease.Forced-unfolding and force-quench refolding of RNA hairpins.Mapping the energy landscape of biomolecules using single molecule force correlation spectroscopy: theory and applicationsMechanical unfolding of RNA: from hairpins to structures with internal multiloops.Determination of thermodynamics and kinetics of RNA reactions by force.Equilibrium sampling for biomolecules under mechanical tensionPRIMO/PRIMONA: a coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy.Entropic stabilization of the folded states of RNA due to macromolecular crowdingFolding and unfolding single RNA molecules under tension.Induced fit or conformational selection for RNA/U1A foldingThe effect of macromolecular crowding, ionic strength and calcium binding on calmodulin dynamics.A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions.Force-induced unzipping transitions in an athermal crowded environment.Communication: Does force spectroscopy of biomolecules probe their intrinsic dynamic properties?The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systemsA kinetic zipper model with intrachain interactions applied to nucleic acid hairpin folding kineticsReal-time control of the energy landscape by force directs the folding of RNA molecules.Hairpin extensions enhance the efficacy of mycolyl transferase-specific antisense oligonucleotides targeting Mycobacterium tuberculosis.Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments.Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures.A magnesium-induced triplex pre-organizes the SAM-II riboswitch.Predicting 3D Structure, Flexibility, and Stability of RNA Hairpins in Monovalent and Divalent Ion SolutionsRNA under tension: Folding Landscapes, Kinetic partitioning Mechanism, and Molecular TensegrityHolliday Junction Thermodynamics and Structure: Coarse-Grained Simulations and ExperimentsExact solution of the Zwanzig-Lauritzen model of polymer crystallization under tensionForce-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapesFree-energy landscape of a hyperstable RNA tetraloop.Coarse-graining RNA nanostructures for molecular dynamics simulations.A new computational approach for mechanical folding kinetics of RNA hairpins.Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures.Refolding dynamics of stretched biopolymers upon force quench.Reduced model captures Mg(2+)-RNA interaction free energy of riboswitchesCoarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges.Perspective: Coarse-grained models for biomolecular systems.Cooperative and directional folding of the preQ1 riboswitch aptamer domain.One-bead coarse-grained model for RNA dynamics.Predicting ribosomal frameshifting efficiency.How do metal ions direct ribozyme folding?
P2860
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P2860
description
2005 nî lūn-bûn
@nan
2005 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի մարտին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
Mechanical unfolding of RNA hairpins.
@ast
Mechanical unfolding of RNA hairpins.
@en
type
label
Mechanical unfolding of RNA hairpins.
@ast
Mechanical unfolding of RNA hairpins.
@en
prefLabel
Mechanical unfolding of RNA hairpins.
@ast
Mechanical unfolding of RNA hairpins.
@en
P2860
P356
P1476
Mechanical unfolding of RNA hairpins.
@en
P2093
D Thirumalai
P2860
P304
P356
10.1073/PNAS.0408314102
P407
P577
2005-03-04T00:00:00Z
P5875
P698
P818
q-bio/0503029