Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol - sprookjes - yvandenbroek - TriplyDB

Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol

Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol

http://www.wikidata.org/entity/Q34561923

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Genotyping-by-sequencing for Populus population genomics: an assessment of genome sampling patterns and filtering approaches Evolution of Gene Duplication in Plants Harnessing the power of RADseq for ecological and evolutionary genomics Genotyping of whole genome amplified reduced representation libraries reveals a cryptic population of Culicoides brevitarsis in the Northern Territory, Australia Genotyping by sequencing approaches to characterise crop genomes: choosing the right tool for the right application Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits Contrasting metabolism in perenniating structures of upland and lowland switchgrass plants late in the growing season Transcriptome analysis in switchgrass discloses ecotype difference in photosynthetic efficiency High-density marker profiling confirms ancestral genomes of Avena species and identifies D-genome chromosomes of hexaploid oat The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum)Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe.Prediction accuracies for growth and wood attributes of interior spruce in space using genotyping-by-sequencing.Evolution in subdivided plant populations: concepts, recent advances and future directions.Population genomic analyses from low-coverage RAD-Seq data: a case study on the non-model cucurbit bottle gourd.Genetic diversity analysis of highly incomplete SNP genotype data with imputations: an empirical assessment Landscape genomics and a common garden trial reveal adaptive differentiation to temperature across Europe in the tree species Alnus glutinosa.Sequential Turnovers of Sex Chromosomes in African Clawed Frogs (Xenopus) Suggest Some Genomic Regions are Good at Sex Determination.A footprint of past climate change on the diversity and population structure of Miscanthus sinensis Defining loci in restriction-based reduced representation genomic data from nonmodel species: sources of bias and diagnostics for optimal clustering Biological invasions, climate change and genomics.Genome-wide association study based on multiple imputation with low-depth sequencing data: application to biofuel traits in reed canarygrass.Construction of relatedness matrices using genotyping-by-sequencing data.GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data.GIbPSs: a toolkit for fast and accurate analyses of genotyping-by-sequencing data without a reference genome.vcfr: a package to manipulate and visualize variant call format data in R.TagDigger: user-friendly extraction of read counts from GBS and RAD-seq data.Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data.Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP.Comprehensive genotyping of the USA national maize inbred seed bank.Genetic Diversity, Population Structure, and Linkage Disequilibrium of a Core Collection of Ziziphus jujuba Assessed with Genome-wide SNPs Developed by Genotyping-by-sequencing and SSR Markers Inbreeding and selection shape genomic diversity in captive populations: Implications for the conservation of endangered species.A community resource for exploring and utilizing genetic diversity in the USDA pea single plant plus collection.Improved tissue culture conditions for the emerging C4 model Panicum hallii Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site-associated DNA sequencing (ddRADseq)Comparative genomic analysis of the R2R3 MYB secondary cell wall regulators of Arabidopsis, poplar, rice, maize, and switchgrass.Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing.Genome-Wide Association Study Reveals Natural Variations Contributing to Drought Resistance in Crops.LinkImputeR: user-guided genotype calling and imputation for non-model organisms.The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.).

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Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol

http://www.wikidata.org/entity/Q34561923

description

2013 nî lūn-bûn

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2013 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի հունվարին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

@zh-hant

2013年論文

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2013年論文

@zh-mo

2013年論文

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2013年论文

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name

Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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type

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Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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JOURNAL.PGEN.1003215

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Switchgrass genomic diversity, ...... k-based SNP discovery protocol

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Alexander E Lipka

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Denise E Costich

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Jeff Glaubitz

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Jerome H Cherney

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Michael D Casler

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P2860

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

The B73 Maize Genome: Complexity, Diversity, and Dynamics

Setaria viridis: a model for C4 photosynthesis

Basic local alignment search tool

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

Rapid SNP discovery and genetic mapping using sequenced RAD markers

A first-generation haplotype map of maize

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape

Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

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e1003215

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1

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9

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Robert J Elshire

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235371993

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23349638

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Panicum virgatum

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3547862

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