RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations.
about
SAXS studies of RNA: structures, dynamics, and interactions with partnersCounting the ions surrounding nucleic acids.The impact of base stacking on the conformations and electrostatics of single-stranded DNA.Divalent ion competition reveals reorganization of an RNA ion atmosphere upon foldingPredicting Molecular Crowding Effects in Ion-RNA InteractionsWhy double-stranded RNA resists condensationAccurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids.Ion distributions around left- and right-handed DNA and RNA duplexes: a comparative study.TBI server: a web server for predicting ion effects in RNA folding.Alternative divalent cations (Zn²⁺, Co²⁺, and Mn²⁺) are not mutagenic at conditions optimal for HIV-1 reverse transcriptase activity.Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements.The ionic atmosphere around A-RNA: Poisson-Boltzmann and molecular dynamics simulations.Ion-mediated RNA structural collapse: effect of spatial confinement.Tuning RNA Flexibility with Helix Length and Junction Sequence.Understanding the kinetic mechanism of RNA single base pair formationIntegrating molecular dynamics simulations with chemical probing experiments using SHAPE-FIT.DNA A-tracts are not curved in solutions containing high concentrations of monovalent cations.Polyelectrolyte properties of single stranded DNA measured using SAXS and single-molecule FRET: Beyond the wormlike chain model.Ion counting from explicit-solvent simulations and 3D-RISM.Sensitivities to parameterization in the size-modified Poisson-Boltzmann equation.Multiscale Multiphysics and Multidomain Models I: Basic Theory.Exploring the electrostatic energy landscape for tetraloop-receptor docking.Investigating increasingly complex macromolecular systems with small-angle X-ray scattering.Extracting water and ion distributions from solution x-ray scattering experiments.How do metal ions direct ribozyme folding?Does Cation Size Affect Occupancy and Electrostatic Screening of the Nucleic Acid Ion Atmosphere?Comparison of monovalent and divalent ion distributions around a DNA duplex with molecular dynamics simulation and a Poisson-Boltzmann approach.Predicting ion-nucleic acid interactions by energy landscape-guided sampling.Many-body effect in ion binding to RNA.Effect of initial ion positions on the interactions of monovalent and divalent ions with a DNA duplex as revealed with atomistic molecular dynamics simulations.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.Unraveling Mg2+-RNA binding with atomistic molecular dynamics.Opposing Effects of Multivalent Ions on the Flexibility of DNA and RNA.Hexahydrated Mg2+ Binding and Outer-Shell Dehydration on RNA Surface.Competitive Binding of Mg2+ and Na+ Ions to Nucleic Acids: From Helices to Tertiary Structures.Generalized Manning Condensation Model Captures the RNA Ion Atmosphere.
P2860
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P2860
RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations.
description
2012 nî lūn-bûn
@nan
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
2012年论文
@zh
2012年论文
@zh-cn
name
RNA and its ionic cloud: solut ...... omically detailed simulations.
@ast
RNA and its ionic cloud: solut ...... omically detailed simulations.
@en
type
label
RNA and its ionic cloud: solut ...... omically detailed simulations.
@ast
RNA and its ionic cloud: solut ...... omically detailed simulations.
@en
prefLabel
RNA and its ionic cloud: solut ...... omically detailed simulations.
@ast
RNA and its ionic cloud: solut ...... omically detailed simulations.
@en
P2093
P2860
P1433
P1476
RNA and its ionic cloud: solut ...... tomically detailed simulations
@en
P2093
Lois Pollack
Serdal Kirmizialtin
Suzette A Pabit
P2860
P304
P356
10.1016/J.BPJ.2012.01.013
P407
P577
2012-02-21T00:00:00Z