PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform
about
Scaling up discovery of hidden diversity in fungi: impacts of barcoding approachesPipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data.Metagenomic analysis of oomycete communities from the rhizosphere of field pea on the Canadian prairies.Redefining the Chronic-Wound Microbiome: Fungal Communities Are Prevalent, Dynamic, and Associated with Delayed Healing.Fungal ITS1 Deep-Sequencing Strategies to Reconstruct the Composition of a 26-Species Community and Evaluation of the Gut Mycobiota of Healthy Japanese Individuals.Exploring the Impacts of Postharvest Processing on the Microbiota and Metabolite Profiles during Green Coffee Bean Production.Fire regime, not time-since-fire, affects soil fungal community diversity and composition in temperate grasslands.High Throughput Sequencing for Detection of Foodborne Pathogens.Quantitative losses vs. qualitative stability of ectomycorrhizal community responses to 3 years of experimental summer drought in a beech-spruce forest.Diversity and dynamics of the DNA- and cDNA-derived compost fungal communities throughout the commercial cultivation process for Agaricus bisporus.Environmental Metabarcoding Reveals Contrasting Belowground and Aboveground Fungal Communities from Poplar at a Hg Phytomanagement Site.Characterization of Bacterial and Fungal Community Dynamics by High-Throughput Sequencing (HTS) Metabarcoding during Flax Dew-Retting.CONSTAX: a tool for improved taxonomic resolution of environmental fungal ITS sequences.The microbial community of a biofilm contact reactor for the treatment of winery wastewater.Identification of fungi in shotgun metagenomics datasets.Fungal Biodiversity and Their Role in Soil Health.Evaluation of a therapy for Idiopathic Chronic Enterocolitis in rhesus macaques (Macaca mulatta) and linked microbial community correlates.Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data.The Intestinal Mycobiota in Wild Zebrafish Comprises Mainly Dothideomycetes While Saccharomycetes Predominate in Their Laboratory-Reared Counterparts.Fungi in the Wound Microbiome.Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation.Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcodingSoil bacterial networks are less stable under drought than fungal networksTen reasons why a sequence-based nomenclature is not useful for fungi anytime soonGut fungal dysbiosis correlates with reduced efficacy of fecal microbiota transplantation in Clostridium difficile infectionLand use driven change in soil pH affects microbial carbon cycling processes
P2860
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P2860
PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform
description
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2015年の論文
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2015年学术文章
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name
PIPITS: an automated pipeline ...... e Illumina sequencing platform
@ast
PIPITS: an automated pipeline ...... e Illumina sequencing platform
@en
type
label
PIPITS: an automated pipeline ...... e Illumina sequencing platform
@ast
PIPITS: an automated pipeline ...... e Illumina sequencing platform
@en
prefLabel
PIPITS: an automated pipeline ...... e Illumina sequencing platform
@ast
PIPITS: an automated pipeline ...... e Illumina sequencing platform
@en
P2093
P2860
P50
P356
P1476
PIPITS: an automated pipeline ...... e Illumina sequencing platform
@en
P2093
Anna Oliver
Joanne Taylor
Melanie Gibbs
P2860
P304
P356
10.1111/2041-210X.12399
P577
2015-05-25T00:00:00Z