about
Advances in the characterization of RNA-binding proteinsAssessing the Current State of Amber Force Field Modifications for DNABIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation dataStructural basis of human PCNA sliding on DNA.Compaction of Duplex Nucleic Acids upon Native Electrospray Mass Spectrometry.Interstrand cross-linking implies contrasting structural consequences for DNA: insights from molecular dynamics.Mapping the affinity landscape of Thrombin-binding aptamers on 2΄F-ANA/DNA chimeric G-Quadruplex microarraysConformational polymorphism or structural invariance in DNA photoinduced lesions: implications for repair rates.Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A.Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences.Exploring the Dynamics of Propeller Loops in Human Telomeric DNA Quadruplexes Using Atomistic Simulations.Sequence dependency of canonical base pair opening in the DNA double helix.Rational design of novel N-alkyl-N capped biostable RNA nanostructures for efficient long-term inhibition of gene expressionChanging POU dimerization preferences converts Oct6 into a pluripotency inducerDeficiencies in Molecular Dynamics Simulation-Based Prediction of Protein-DNA Binding Free Energy Landscapes.Contributions of Sequence to the Higher-Order Structures of DNA.DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p.Structure and dynamics of DNA loops on nucleosomes studied with atomistic, microsecond-scale molecular dynamics.Conformational selection and dynamic adaptation upon linker histone binding to the nucleosomeDNA mutation motifs in the genes associated with inherited diseases.Ibuprofen and ketoprofen potentiate UVA-induced cell death by a photosensitization process.Long-timescale dynamics of the Drew-Dickerson dodecamer.How accurate are accurate force-fields for B-DNA?The RNF168 paralog RNF169 defines a new class of ubiquitylated histone reader involved in the response to DNA damage.The effect of the neutral cytidine protonated analogue pseudoisocytidine on the stability of i-motif structures.Structures of the kinetically trapped i-motif DNA intermediates.doGlycans-Tools for Preparing Carbohydrate Structures for Atomistic Simulations of Glycoproteins, Glycolipids, and Carbohydrate Polymers for GROMACS.E-motif formed by extrahelical cytosine bases in DNA homoduplexes of trinucleotide and hexanucleotide repeats.Resolving the Ligand-Binding Specificity in c-MYC G-Quadruplex DNA: Absolute Binding Free Energy Calculations and SPR Experiment.Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding.Molecular simulations of cellular processes.How proteins bind to DNA: target discrimination and dynamic sequence search by the telomeric protein TRF1.Insilico direct folding of thrombin-binding aptamer G-quadruplex at all-atom level.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.Sequence-dependent response of DNA to torsional stress: a potential biological regulation mechanism.Molecular dynamics simulations of the glucocorticoid receptor DNA-binding domain suggest a role of the lever-arm mobility in transcriptional output.Understanding the Relative Flexibility of RNA and DNA Duplexes: Stretching and Twist-Stretch Coupling.Polarizable Force Field for DNA Based on the Classical Drude Oscillator: I. Refinement Using Quantum Mechanical Base Stacking and Conformational Energetics.Overstretching of B-DNA with various pulling protocols: Appearance of structural polymorphism and S-DNA.A DNA structural alphabet provides new insight into DNA flexibility.
P2860
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P2860
description
2015 nî lūn-bûn
@nan
2015年の論文
@ja
2015年学术文章
@wuu
2015年学术文章
@zh-cn
2015年学术文章
@zh-hans
2015年学术文章
@zh-my
2015年学术文章
@zh-sg
2015年學術文章
@yue
2015年學術文章
@zh
2015年學術文章
@zh-hant
name
Parmbsc1: a refined force field for DNA simulations.
@ast
Parmbsc1: a refined force field for DNA simulations.
@en
type
label
Parmbsc1: a refined force field for DNA simulations.
@ast
Parmbsc1: a refined force field for DNA simulations.
@en
prefLabel
Parmbsc1: a refined force field for DNA simulations.
@ast
Parmbsc1: a refined force field for DNA simulations.
@en
P2093
P2860
P50
P356
P1154
2-s2.0-84955684595
P1433
P1476
Parmbsc1: a refined force field for DNA simulations.
@en
P2093
Adam Hospital
Charles A Laughton
David A Case
Ivan Ivani
Jürgen Walther
Modesto Orozco
Pau Andrio
Ramon Goñi
P2860
P2888
P356
10.1038/NMETH.3658
P50
P5530
P577
2015-11-16T00:00:00Z
P5875
P6179
1050825171