about
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot projectGenome-wide analysis of menin binding provides insights into MEN1 tumorigenesis.Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)NCBI GEO: archive for functional genomics data sets--updateInterferon-γ links ultraviolet radiation to melanomagenesis in miceDNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarraysA single IGF1 allele is a major determinant of small size in dogsSuppressor role of activating transcription factor 2 (ATF2) in skin cancerOn the Selective Packaging of Genomic RNA by HIV-1Orchestrating high-throughput genomic analysis with BioconductorHigh-resolution mapping and characterization of open chromatin across the genomeRare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophreniaHomozygosity mapping of Hallervorden-Spatz syndrome to chromosome 20p12.3-p13A polymorphism in IRF4 affects human pigmentation through a tyrosinase-dependent MITF/TFAP2A pathwayNCI-60 whole exome sequencing and pharmacological CellMiner analysesLineage of origin in rhabdomyosarcoma informs pharmacological responseSRAdb: query and use public next-generation sequencing data from within R.Integrated analysis of DNA methylation, immunohistochemistry and mRNA expression, data identifies a methylation expression index (MEI) robustly associated with survival of ER-positive breast cancer patients.BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.Detection of novel amplicons in prostate cancer by comprehensive genomic profiling of prostate cancer cell lines using oligonucleotide-based arrayCGH.Canine tumor cross-species genomics uncovers targets linked to osteosarcoma progressionAssessment of automated image analysis of breast cancer tissue microarrays for epidemiologic studies.RARRES2 functions as a tumor suppressor by promoting β-catenin phosphorylation/degradation and inhibiting p38 phosphorylation in adrenocortical carcinoma.Database of mRNA gene expression profiles of multiple human organsRb1 loss modifies but does not initiate alveolar rhabdomyosarcomaLinkage and association between inflammatory bowel disease and a locus on chromosome 12Super-enhancers delineate disease-associated regulatory nodes in T cells.Evidence for an unanticipated relationship between undifferentiated pleomorphic sarcoma and embryonal rhabdomyosarcomaRCircos: an R package for Circos 2D track plots.Antagonistic cross-regulation between Sox9 and Sox10 controls an anti-tumorigenic program in melanoma.Identification of an inhibitor of the EWS-FLI1 oncogenic transcription factor by high-throughput screening.Exome sequencing identifies GRIN2A as frequently mutated in melanoma.Chromothripsis and focal copy number alterations determine poor outcome in malignant melanomaAdvanced bone formation in mice with a dominant-negative mutation in the thyroid hormone receptor β gene due to activation of Wnt/β-catenin protein signaling.Exclusion of the 750-kb genetically unstable region at Xq27 as a candidate locus for prostate malignancy in HPCX1-linked families.Harnessing genomics to identify environmental determinants of heritable disease.The Bioconductor channel in F1000Research.The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology.GEOmetadb: powerful alternative search engine for the Gene Expression OmnibusWhole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma
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P50
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