CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model - sprookjes - yvandenbroek - TriplyDB

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

http://www.wikidata.org/entity/Q39596956

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The landscape of long noncoding RNAs in the human transcriptome Computational Identification of Novel Genes: Current and Future Perspectives Well-characterized sequence features of eukaryote genomes and implications for ab initio gene prediction Identifying (non-)coding RNAs and small peptides: challenges and opportunities The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells Identification of Aedes aegypti Long Intergenic Non-coding RNAs and Their Association with Wolbachia and Dengue Virus Infection Advances in long noncoding RNAs: identification, structure prediction and function annotation Computational approaches towards understanding human long non-coding RNA biology Long Noncoding RNAs: A New Regulatory Code in Metabolic Control Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated with a global decrease of histone trimethylation in mice Comparative Transcriptome Analysis Reveals Substantial Tissue Specificity in Human Aortic Valve The floral transcriptomes of four bamboo species (Bambusoideae; Poaceae): support for common ancestry among woody bamboos Novel long noncoding RNAs (lncRNAs) in myogenesis: a miR-31 overlapping lncRNA transcript controls myoblast differentiation Expression of lncRNAs in Low-Grade Gliomas and Glioblastoma Multiforme: An In Silico Analysis.GermlncRNA: a unique catalogue of long non-coding RNAs and associated regulations in male germ cell development.Identification and function annotation of long intervening noncoding RNAs.Genome-wide view of natural antisense transcripts in Arabidopsis thaliana.Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol.spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.Assessment and improvement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations using deep transcriptome sequencing data Comprehensive assembly of novel transcripts from unmapped human RNA-Seq data and their association with cancer The identification and characterization of novel transcripts from RNA-seq data.Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster Characterizing and annotating the genome using RNA-seq data.Global transcript structure resolution of high gene density genomes through multi-platform data integration Identification and functional analysis of long non-coding RNAs in human and mouse early embryos based on single-cell transcriptome data Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human.FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome Transcriptome analyses and differential gene expression in a non-model fish species with alternative mating tactics.Profiling of long non-coding RNAs identifies LINC00958 and LINC01296 as candidate oncogenes in bladder cancer Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish.lncRNA-screen: an interactive platform for computationally screening long non-coding RNAs in large genomics datasets.Microarray expression profiling in the denervated hippocampus identifies long noncoding RNAs functionally involved in neurogenesis Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries Identification and characterization of long intergenic noncoding RNAs in bovine mammary glands.Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.Exploring the stability of long intergenic non-coding RNA in K562 cells by comparative studies of RNA-Seq datasets In depth annotation of the Anopheles gambiae mosquito midgut transcriptome.Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer

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P2860

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

http://www.wikidata.org/entity/Q39596956

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name

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

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CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model.

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CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

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CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

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CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model.

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CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

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Hyun Jung Park

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Jean-Pierre Kocher

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Liguo Wang

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Shengqin Wang

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Wei Li

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P2860

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

Differentiating protein-coding and noncoding RNA: challenges and ambiguities

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

Long noncoding RNA in genome regulation: prospects and mechanisms

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

The transcriptional landscape of the mammalian genome

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

Long noncoding RNAs with enhancer-like function in human cells

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

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