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The role of methylation in the intrinsic dynamics of B- and Z-DNANew insights into DNA triplexes: residual twist and radial difference as measures of base triplet non-isomorphism and their implication to sequence-dependent non-uniform DNA triplexStructure, internal motions and association-dissociation kinetics of the i-motif dimer of d(5mCCTCACTCC).Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC)Structure of d(CGGGTACCCG)4as a four-way Holliday junctionB-DNA structure is intrinsically polymorphic: even at the level of base pair positionsDNA polymorphism in crystals: three stable conformations for the decadeoxynucleotide d(GCATGCATGC)Understanding the sequence-dependence of DNA groove dimensions: implications for DNA interactionsThe intrinsic mechanics of B-DNA in solution characterized by NMRDNA structures from phosphate chemical shifts.Intrinsic flexibility of B-DNA: the experimental TRX scale.Solution structures of a duplex containing an adenine opposite a gap (absence of one nucleotide). An NMR study and molecular dynamic simulations with explicit water molecules.Conformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale.Sequence preference for BI/BII conformations in DNA: MD and crystal structure data analysis.Bending and adaptability to proteins of the cAMP DNA-responsive element: molecular dynamics contrasted with NMRRecognition complex between the HMG domain of LEF-1 and its cognate DNA studied by molecular dynamics simulations with explicit solvation.An FTIR investigation of flanking sequence effects on the structure and flexibility of DNA binding sitesStructural equilibrium of DNA represented with different force fields.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) stepsSequence-dependent Kink-and-Slide deformations of nucleosomal DNA facilitated by histone arginines bound in the minor groove.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.The phosphate clamp: a small and independent motif for nucleic acid backbone recognitionμABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNAOn the molecular basis of uracil recognition in DNA: comparative study of T-A versus U-A structure, dynamics and open base pair kinetics.Calculated distortions of duplex DNA by a cis, syn cyclobutane thymine dimer are unaffected by a 3' TpA step.Simulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics.Mg2+ in the major groove modulates B-DNA structure and dynamicsTowards a molecular dynamics consensus view of B-DNA flexibility31P NMR investigation of backbone dynamics in DNA binding sites.Impact of CpG methylation on structure, dynamics and solvation of cAMP DNA responsive elementDynamic hydrogen bonding and DNA flexibility in minor groove binders: molecular dynamics simulation of the polyamide f-ImPyIm bound to the Mlu1 (MCB) sequence 5'-ACGCGT-3' in 2:1 motif.Conformational characteristics and correlations in crystal structures of nucleic acid oligonucleotides: evidence for sub-states.Evaluation of DNA Force Fields in Implicit Solvation.The role of the phosphorus BI-BII transition in protein-DNA recognition: the NF-kappaB complex.Alpha/gamma transitions in the B-DNA backbone.Sensitivity of NMR internucleotide distances to B-DNA conformation: underlying mechanics.Theoretical studies of DNA-RNA hybrid conformations.DNA structural forms.Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.Identification of a pKa-regulating motif stabilizing imidazole-modified double-stranded DNA.
P2860
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P2860
description
1993 nî lūn-bûn
@nan
1993年の論文
@ja
1993年論文
@yue
1993年論文
@zh-hant
1993年論文
@zh-hk
1993年論文
@zh-mo
1993年論文
@zh-tw
1993年论文
@wuu
1993年论文
@zh
1993年论文
@zh-cn
name
BI-BII transitions in B-DNA.
@en
type
label
BI-BII transitions in B-DNA.
@en
prefLabel
BI-BII transitions in B-DNA.
@en
P2093
P2860
P356
P1476
BI-BII transitions in B-DNA.
@en
P2093
P2860
P304
P356
10.1093/NAR/21.3.561
P577
1993-02-01T00:00:00Z