A computational genomics pipeline for prokaryotic sequencing projects - sprookjes - yvandenbroek - TriplyDB

A computational genomics pipeline for prokaryotic sequencing projects

A computational genomics pipeline for prokaryotic sequencing projects

http://www.wikidata.org/entity/Q41866812

about

CISA: contig integrator for sequence assembly of bacterial genomes Swabs to genomes: a comprehensive workflow Complete Genome Sequence of Corynebacterium minutissimum, an Opportunistic Pathogen and the Causative Agent of Erythrasma.IonGAP: integrative bacterial genome analysis for Ion Torrent sequence data.Automated ensemble assembly and validation of microbial genomes.Genomic fluidity: an integrative view of gene diversity within microbial populations CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge Next generation sequence assembly with AMOS.A neutral theory of genome evolution and the frequency distribution of genes Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti.Phenotypic and genomic analysis of hypervirulent human-associated Bordetella bronchiseptica Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen ORFcor: identifying and accommodating ORF prediction inconsistencies for phylogenetic analysis Whole-genome phylogenomic heterogeneity of Neisseria gonorrhoeae isolates with decreased cephalosporin susceptibility collected in Canada between 1989 and 2013.Where does Neisseria acquire foreign DNA from: an examination of the source of genomic and pathogenic islands and the evolution of the Neisseria genus.Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis.Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti.PGAT: a multistrain analysis resource for microbial genomes.Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus.Genome Sequences of Three Helicobacter pylori Strains from Patients with Gastric Mucosa-Associated Lymphoid Tissue Lymphoma Novel multitarget real-time PCR assay for rapid detection of Bordetella species in clinical specimens.Neisseria Base: a comparative genomics database for Neisseria meningitidis.A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.Genome sequence of the polychlorinated-biphenyl degrader Pseudomonas pseudoalcaligenes KF707 Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities.Complete Genome Sequence of Simiduia agarivorans SA1(T), a Marine Bacterium Able To Degrade a Variety of Polysaccharides.Genomic Epidemiology and Molecular Resistance Mechanisms of Azithromycin-Resistant Neisseria gonorrhoeae in Canada from 1997 to 2014 Use of Whole Genome Sequencing and Patient Interviews To Link a Case of Sporadic Listeriosis to Consumption of Prepackaged Lettuce.Complete Genome Sequence of Vibrio parahaemolyticus Environmental Strain UCM-V493.A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens.GAMOLA2, a Comprehensive Software Package for the Annotation and Curation of Draft and Complete Microbial Genomes.Live genomics for pathogen monitoring in public health.Draft Genome Sequence of Lactobacillus animalis 381-IL-28.Draft genome sequence of Salmonella enterica serovar Typhimurium ST1660/06, a multidrug-resistant clinical strain isolated from a diarrheic patient.Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype.Genomic basis of a polyagglutinating isolate of Neisseria meningitidis.

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P2860

A computational genomics pipeline for prokaryotic sequencing projects

http://www.wikidata.org/entity/Q41866812

description

2010 nî lūn-bûn

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

@zh-tw

2010年论文

@wuu

2010年论文

@zh

2010年论文

@zh-cn

name

A computational genomics pipeline for prokaryotic sequencing projects

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type

label

A computational genomics pipeline for prokaryotic sequencing projects

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prefLabel

A computational genomics pipeline for prokaryotic sequencing projects

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A computational genomics pipeline for prokaryotic sequencing projects

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Andrew B Conley

http://www.w3.org/2001/XMLSchema#string

Andrey O Kislyuk

http://www.w3.org/2001/XMLSchema#string

Dhwani Govil

http://www.w3.org/2001/XMLSchema#string

I King Jordan

http://www.w3.org/2001/XMLSchema#string

Jay C Humphrey

http://www.w3.org/2001/XMLSchema#string

Kathleen M Tatti

http://www.w3.org/2001/XMLSchema#string

Lee S Katz

http://www.w3.org/2001/XMLSchema#string

Leonard W Mayer

http://www.w3.org/2001/XMLSchema#string

Maria L Tondella

http://www.w3.org/2001/XMLSchema#string

Matthew S Hagen

http://www.w3.org/2001/XMLSchema#string

P2860

CAMERA: a community resource for metagenomics

The RAST Server: rapid annotations using subsystems technology

Minimus: a fast, lightweight genome assembler

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

DNA uptake during bacterial transformation

Genome sequencing in microfabricated high-density picolitre reactors

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Accurate whole human genome sequencing using reversible terminator chemistry

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

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1819-1826

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scholarly article

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10.1093/BIOINFORMATICS/BTQ284

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15

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26

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Brian H Harcourt

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2010-06-02T00:00:00Z

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44645874

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20519285

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2905547

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