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Highlights from the 11th ISCB Student Council Symposium 2015 : Dublin, Ireland. 10 July 2015Practical Approaches for Mining Frequent Patterns in Molecular DatasetsA primer to frequent itemset mining for bioinformaticsLipopolysaccharide-responsive phosphoproteins in Nicotiana tabacum cellsEctopic microRNA-150-5p transcription sensitizes glucocorticoid therapy response in MM1S multiple myeloma cells but fails to overcome hormone therapy resistance in MM1R cellsMining the entire Protein DataBank for frequent spatially cohesive amino acid patterns.jqcML: an open-source java API for mass spectrometry quality control data in the qcML format.Getting your peaks in line: a review of alignment methods for NMR spectral data.SFINX: Straightforward Filtering Index for Affinity Purification-Mass Spectrometry Data Analysis.Integration of gel-based proteome data with pProRep.Organization of proteomics data with YassDB.COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia.Banana (Musa spp.) as a model to study the meristem proteome: acclimation to osmotic stress.A hormone and proteome approach to picturing the initial metabolic events during Plasmodiophora brassicae infection on Arabidopsis.A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana.A manually curated network of the PML nuclear body interactome reveals an important role for PML-NBs in SUMOylation dynamics.Flexible network reconstruction from relational databases with Cytoscape and CytoSQL.Multidisciplinary study of the secondary immune response in grandparents re-exposed to chickenpox.Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids.A community proposal to integrate proteomics activities in ELIXIRAn integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data.The radiosensitising effect of gemcitabine and its main metabolite dFdU under low oxygen conditions is in vitro not dependent on functional HIF-1 protein.Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thalianaTowards automated discrimination of lipids versus peptides from full scan mass spectra.Structural properties of prokaryotic promoter regions correlate with functional features.Dietary flavanols modulate the transcription of genes associated with cardiovascular pathology without changes in their DNA methylation state.Unravelling associations between unassigned mass spectrometry peaks with frequent itemset mining techniques.Open-Source, Platform-Independent Library and Online Scripting Environment for Accessing Thermo Scientific RAW Files.sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets.Apolipoprotein L1 Variant Associated with Increased Susceptibility to Trypanosome InfectionProteome analysis of non-model plants: a challenging but powerful approach.Best practices for hybridization design in two-colour microarray analysis.Next generation functional proteomics in non-model plants: A survey on techniques and applications for the analysis of protein complexes and post-translational modifications.Machine learning applications in proteomics research: how the past can boost the future.Bioinformatics approaches for the functional interpretation of protein lists: from ontology term enrichment to network analysis.Withaferin A induces heme oxygenase (HO-1) expression in endothelial cells via activation of the Keap1/Nrf2 pathway.qcML: an exchange format for quality control metrics from mass spectrometry experiments.Unraveling tobacco BY-2 protein complexes with BN PAGE/LC-MS/MS and clustering methods.On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition.Protein complex analysis: From raw protein lists to protein interaction networks.
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description
hulumtues
@sq
researcher
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wetenschapper
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հետազոտող
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name
Kris Laukens
@ast
Kris Laukens
@en
Kris Laukens
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Kris Laukens
@nl
Kris Laukens
@sl
type
label
Kris Laukens
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Kris Laukens
@en
Kris Laukens
@es
Kris Laukens
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Kris Laukens
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prefLabel
Kris Laukens
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Kris Laukens
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Kris Laukens
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Kris Laukens
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Kris Laukens
@sl
P1053
B-7806-2012
P106
P2002
KrisLaukens
P21
P2456
P31
P496
0000-0002-8217-2564