Jovan Stojković (Serbian Cyrillic: Јован Стојковић; 25 December 1878 – 17 February 1920), known as Jovan Babunski (Јован Бабунски), was a Serbian Chetnik commander (Serbian: vojvoda, војвода) during the Macedonian Struggle, Balkan Wars and World War I. Following the murder of his brother and nephew by the Internal Macedonian Revolutionary Organization (IMRO), he joined a Chetnik band and took command of Chetnik units on the Vardar River, where he and his men often engaged Bulgarian and Ottoman forces.