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A statistical sampling algorithm for RNA secondary structure prediction

A statistical sampling algorithm for RNA secondary structure prediction

http://www.wikidata.org/entity/Q24617509

about

Complete probabilistic analysis of RNA shapes A probabilistic model of RNA conformational space Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction ViennaRNA Package 2.0 RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization Partition function and base pairing probabilities of RNA heterodimers A comprehensive comparison of comparative RNA structure prediction approaches Sfold web server for statistical folding and rational design of nucleic acids Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure Abstract shapes of RNA Tfold: efficient in silico prediction of non-coding RNA secondary structures Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints RNAstructure: software for RNA secondary structure prediction and analysis A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution Improving the accuracy of predicting secondary structure for aligned RNA sequences Structural analysis of aligned RNAs Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign Secondary structure in the target as a confounding factor in synthetic oligomer microarray design New insights from cluster analysis methods for RNA secondary structure prediction Computational biology of RNA interactions High-throughput characterization of protein-RNA interactions A Hepatitis C Virus cis-Acting Replication Element Forms a Long-Range RNA-RNA Interaction with Upstream RNA Sequences in NS5B Tissue-specific translation of murine branched-chain alpha-ketoacid dehydrogenase kinase mRNA is dependent upon an upstream open reading frame in the 5'-untranslated region Causal modeling using network ensemble simulations of genetic and gene expression data predicts genes involved in rheumatoid arthritis UBXD4, a UBX-containing protein, regulates the cell surface number and stability of alpha3-containing nicotinic acetylcholine receptors A parallel implementation of the Wuchty algorithm with additional experimental filters to more thoroughly explore RNA conformational space Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution MONSTER v1.1: a tool to extract and search for RNA non-branching structures RNA secondary structure analysis using RNAstructure CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data Using the fast fourier transform to accelerate the computational search for RNA conformational switches Maximum expected accuracy structural neighbors of an RNA secondary structure RNA folding with hard and soft constraints SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data.Computational analysis of RNA structures with chemical probing data.Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.Data-directed RNA secondary structure prediction using probabilistic modeling.

P2860

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P2860

A statistical sampling algorithm for RNA secondary structure prediction

http://www.wikidata.org/entity/Q24617509

description

2003 nî lūn-bûn

@nan

2003 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2003 թվականի դեկտեմբերին հրատարակված գիտական հոդված

@hy

2003年の論文

@ja

2003年論文

@yue

2003年論文

@zh-hant

2003年論文

@zh-hk

2003年論文

@zh-mo

2003年論文

@zh-tw

2003年论文

@wuu

name

A statistical sampling algorithm for RNA secondary structure prediction

@ast

A statistical sampling algorithm for RNA secondary structure prediction

@en

A statistical sampling algorithm for RNA secondary structure prediction

@nl

type

label

A statistical sampling algorithm for RNA secondary structure prediction

@ast

A statistical sampling algorithm for RNA secondary structure prediction

@en

A statistical sampling algorithm for RNA secondary structure prediction

@nl

prefLabel

A statistical sampling algorithm for RNA secondary structure prediction

@ast

A statistical sampling algorithm for RNA secondary structure prediction

@en

A statistical sampling algorithm for RNA secondary structure prediction

@nl

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Nucleic Acids Research

P1476

A statistical sampling algorithm for RNA secondary structure prediction

@en

P2093

Charles E Lawrence

http://www.w3.org/2001/XMLSchema#string

Ye Ding

http://www.w3.org/2001/XMLSchema#string

P2860

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

Molecular beacons: probes that fluoresce upon hybridization

On finding all suboptimal foldings of an RNA molecule

Compilation of tRNA sequences and sequences of tRNA genes

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

Alternative mRNA structures of the cIII gene of bacteriophage lambda determine the rate of its translation initiation.

Selecting optimal antisense reagents.

The activity of siRNA in mammalian cells is related to structural target accessibility: a comparison with antisense oligonucleotides.

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7280-301

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scholarly article

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1870863

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10.1093/NAR/GKG938

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24

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31

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8976556

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14654704

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297010

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