Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
about
RNAalifold: improved consensus structure prediction for RNA alignments.Tfold: efficient in silico prediction of non-coding RNA secondary structuresRNAstructure: software for RNA secondary structure prediction and analysisTurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequencesTurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknotsMultilign: an algorithm to predict secondary structures conserved in multiple RNA sequencesStructator: fast index-based search for RNA sequence-structure patternsFreiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNAIdentification of potential conserved RNA secondary structure throughout influenza A coding regionsPARTS: probabilistic alignment for RNA joinT secondary structure predictionUnifying evolutionary and thermodynamic information for RNA folding of multiple alignmentsEfficient Algorithms for Probing the RNA Mutation LandscapeA fast structural multiple alignment method for long RNA sequencesA review of three different studies on hidden markov models for epigenetic problems: a computational perspectiveFrom consensus structure prediction to RNA gene findingDiscovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary StructuresRNA secondary structure analysis using RNAstructureBioinformatics of prokaryotic RNAsIncorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure predictionCentroidAlign-Web: A Fast and Accurate Multiple Aligner for Long Non-Coding RNAsThe tedious task of finding homologous noncoding RNA genesFast pairwise structural RNA alignments by pruning of the dynamical programming matrix.An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeastFine-tuning structural RNA alignments in the twilight zone.Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.Using the RNAstructure Software Package to Predict Conserved RNA StructuresFrom structure prediction to genomic screens for novel non-coding RNAs.Folding and finding RNA secondary structure.Computational approaches for RNA energy parameter estimationDynalign II: common secondary structure prediction for RNA homologs with domain insertionsAdvances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationshipsExpaRNA-P: simultaneous exact pattern matching and folding of RNAs.Mechanistic Roles of Noncoding RNAs in Lung Cancer Biology and Their Clinical ImplicationsComparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions.Software.ncrna.org: web servers for analyses of RNA sequencesComputational prediction of RNA structural motifs involved in posttranscriptional regulatory processesRNAstructure: Web servers for RNA secondary structure prediction and analysis.Stochastic sampling of the RNA structural alignment space.A max-margin model for efficient simultaneous alignment and folding of RNA sequences.Hidden Markov Models and their Applications in Biological Sequence Analysis.
P2860
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P2860
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
description
2007 nî lūn-bûn
@nan
2007 թուականին հրատարակուած գիտական յօդուած
@hyw
2007 թվականին հրատարակված գիտական հոդված
@hy
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
name
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@ast
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@en
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@nl
type
label
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@ast
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@en
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@nl
prefLabel
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@ast
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@en
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@nl
P2860
P356
P1433
P1476
Efficient pairwise RNA structu ...... gnment constraints in Dynalign
@en
P2093
Arif Ozgun Harmanci
David H Mathews
P2860
P2888
P356
10.1186/1471-2105-8-130
P407
P577
2007-01-01T00:00:00Z
P5875
P6179
1044824773