ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species - Wikidata - awgldk - TriplyDB

ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

http://www.wikidata.org/entity/Q24622368

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The Role of Transcription Factors at Antisense-Expressing Gene Pairs in Yeast.Assessment of algorithms for inferring positional weight matrix motifs of transcription factor binding sites using protein binding microarray data.Computational discovery of regulatory elements in a continuous expression space.MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis.RAP: accurate and fast motif finding based on protein-binding microarray data.Mapping functional transcription factor networks from gene expression data.Saccharomyces genome database provides new regulation data.Discrimination between thermodynamic models of cis-regulation using transcription factor occupancy data.Global alterations of the transcriptional landscape during yeast growth and development in the absence of Ume6-dependent chromatin modification.DNA motif elucidation using belief propagation.Transcription factor regulation and chromosome dynamics during pseudohyphal growth The Hsp90-dependent proteome is conserved and enriched for hub proteins with high levels of protein-protein connectivity.Genetics of single-cell protein abundance variation in large yeast populations.The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.Model-driven mapping of transcriptional networks reveals the circuitry and dynamics of virulence regulation.Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo.motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites Combinatorial Cis-regulation in Saccharomyces Species.Mapping yeast transcriptional networks Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae.Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants.Model-based transcriptome engineering promotes a fermentative transcriptional state in yeast.Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators.High-resolution mapping of transcription factor binding sites on native chromatin Mapping the fine structure of a eukaryotic promoter input-output function.MotifHyades: Expectation Maximization for de novo DNA Motif Pair Discovery on Paired Sequences.The conserved histone deacetylase Rpd3 and the DNA binding regulator Ume6 repress BOI1's meiotic transcript isoform during vegetative growth in Saccharomyces cerevisiae.Mot1 redistributes TBP from TATA-containing to TATA-less promoters.A new exhaustive method and strategy for finding motifs in ChIP-enriched regions.Correspondence: DNA shape is insufficient to explain binding.Developmentally regulated internal transcription initiation during meiosis in budding yeast.Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein-DNA binding.Evidence for a hierarchical transcriptional circuit in Drosophila male germline involving testis-specific TAF and two gene-specific transcription factors, Mod and Acj6.Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry.Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding.Intrinsic cooperativity potentiates parallel -regulatory evolution

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ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

http://www.wikidata.org/entity/Q24622368

description

2012 nî lūn-bûn

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2012 թուականի Յունուարին հրատարակուած գիտական յօդուած

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

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Nucleic Acids Research

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ScerTF: a comprehensive databa ...... ices for Saccharomyces species

@en

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Aaron T Spivak

http://www.w3.org/2001/XMLSchema#string

Gary D Stormo

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P2860

Asap: a framework for over-representation statistics for transcription factor binding sites

Characterization of a human homologue of the Saccharomyces cerevisiae transcription factor spt3 (SUPT3H)

GCN4, a eukaryotic transcriptional activator protein, binds as a dimer to target DNA

The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle

Genomic expression programs in the response of yeast cells to environmental changes

Transcriptional activation of metalloid tolerance genes in Saccharomyces cerevisiae requires the AP-1-like proteins Yap1p and Yap8p.

Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

Transcriptional regulatory code of a eukaryotic genome.

High-resolution DNA-binding specificity analysis of yeast transcription factors.

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D162-8

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scholarly article

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1775417

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10.1093/NAR/GKR1180

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Database issue

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40

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2012-01-01T00:00:00Z

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51852232

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22140105

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3245033

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