deepBase: a database for deeply annotating and mining deep sequencing data - Wikidata - awgldk - TriplyDB

deepBase: a database for deeply annotating and mining deep sequencing data

deepBase: a database for deeply annotating and mining deep sequencing data

http://www.wikidata.org/entity/Q24642907

about

Gene regulation in Giardia lambia involves a putative microRNA derived from a small nucleolar RNA DICER- and AGO3-dependent generation of retinoic acid-induced DR2 Alu RNAs regulates human stem cell proliferation starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data miRNEST database: an integrative approach in microRNA search and annotation Precursor miR-886, a novel noncoding RNA repressed in cancer, associates with PKR and modulates its activity.The H19 lincRNA is a developmental reservoir of miR-675 that suppresses growth and Igf1r Sequencing technologies and genome sequencing microRNAs as pharmacogenomic biomarkers for drug efficacy and drug safety assessment A Novel Type of Non-coding RNA, nc886, Implicated in Tumor Sensing and Suppression Single molecule fluorescence approaches shed light on intracellular RNAs Wnt-signalling pathways and microRNAs network in carcinogenesis: experimental and bioinformatics approaches MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting YM500: a small RNA sequencing (smRNA-seq) database for microRNA research Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data.miRspring: a compact standalone research tool for analyzing miRNA-seq data.Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers.Geoseq: a tool for dissecting deep-sequencing datasets.The characterisation of piRNA-related 19mers in the mouse.mirTools: microRNA profiling and discovery based on high-throughput sequencing Overexpression of the lung cancer-prognostic miR-146b microRNAs has a minimal and negative effect on the malignant phenotype of A549 lung cancer cells.Retrotransposon-centered analysis of piRNA targeting shows a shift from active to passive retrotransposon transcription in developing mouse testes Silencing of LINE-1 retrotransposons contributes to variation in small noncoding RNA expression in human cancer cells.ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs.Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs.Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function.LncRBase: an enriched resource for lncRNA information.piRNAQuest: searching the piRNAome for silencers A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei.Non-coding RNA networks underlying cognitive disorders across the lifespan.Shielding the messenger (RNA): microRNA-based anticancer therapies.A role for noncanonical microRNAs in the mammalian brain revealed by phenotypic differences in Dgcr8 versus Dicer1 knockouts and small RNA sequencing.Diversity and functional convergence of small noncoding RNAs in male germ cell differentiation and fertilization.Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma.Bioinformatic Resources of microRNA Sequences, Gene Targets, and Genetic Variation.deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data.Conservation of the relative tRNA composition in healthy and cancerous tissues

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deepBase: a database for deeply annotating and mining deep sequencing data

http://www.wikidata.org/entity/Q24642907

description

2010 nî lūn-bûn

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2010 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հունվարին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

deepBase: a database for deeply annotating and mining deep sequencing data

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deepBase: a database for deeply annotating and mining deep sequencing data

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deepBase: a database for deeply annotating and mining deep sequencing data

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type

label

deepBase: a database for deeply annotating and mining deep sequencing data

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deepBase: a database for deeply annotating and mining deep sequencing data

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deepBase: a database for deeply annotating and mining deep sequencing data

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prefLabel

deepBase: a database for deeply annotating and mining deep sequencing data

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deepBase: a database for deeply annotating and mining deep sequencing data

@en

deepBase: a database for deeply annotating and mining deep sequencing data

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Nucleic Acids Research

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deepBase: a database for deeply annotating and mining deep sequencing data

@en

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Jian-Hua Yang

http://www.w3.org/2001/XMLSchema#string

Yue-Qin Chen

http://www.w3.org/2001/XMLSchema#string

P2860

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

An endogenous small interfering RNA pathway in Drosophila

Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

miRBase: tools for microRNA genomics

The UCSC Genome Browser Database: update 2009

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D123-30

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10.1093/NAR/GKP943

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Database issue

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38

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40453233

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19966272

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2808990

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