DMS footprinting of structured RNAs and RNA-protein complexes - Wikidata - awgldk - TriplyDB

DMS footprinting of structured RNAs and RNA-protein complexes

DMS footprinting of structured RNAs and RNA-protein complexes

http://www.wikidata.org/entity/Q24657868

about

RNA structural analysis by evolving SHAPE chemistry Progress and challenges for chemical probing of RNA structure inside living cells Imp3 unfolds stem structures in pre-rRNA and U3 snoRNA to form a duplex essential for small subunit processing.Catalysts from synthetic genetic polymers Small RNA modules confer different stabilities and interact differently with multiple targets Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis Sharing and archiving nucleic acid structure mapping data Chemical Tools for Dissecting the Role of lncRNAs in Epigenetic Regulation Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE Structural architecture of the human long non-coding RNA, steroid receptor RNA activator.Computational analysis of RNA structures with chemical probing data.ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction.Evaluation of the information content of RNA structure mapping data for secondary structure prediction.Protein roles in group I intron RNA folding: the tyrosyl-tRNA synthetase CYT-18 stabilizes the native state relative to a long-lived misfolded structure without compromising folding kinetics.Optimization of a novel biophysical model using large scale in vivo antisense hybridization data displays improved prediction capabilities of structurally accessible RNA regions Rapid quantification and analysis of kinetic •OH radical footprinting data using SAFA.Molecular biology: A second layer of information in RNA.A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA The mutate-and-map protocol for inferring base pairs in structured RNA.Cotranscriptional folding of a riboswitch at nucleotide resolution.Multiple unfolding events during native folding of the Tetrahymena group I ribozyme Simplified RNA secondary structure mapping by automation of SHAPE data analysis.A two-dimensional mutate-and-map strategy for non-coding RNA structure.Protein-RNA footprinting: an evolving tool.Interstrand cross-link and bioconjugate formation in RNA from a modified nucleotide.High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states.An in vitro-selected RNA receptor for the GAAC loop: modular receptor for non-GNRA-type tetraloop.Macrolide-peptide conjugates as probes of the path of travel of the nascent peptides through the ribosome.Secondary structure of the Irf7 5'-UTR, analyzed using SHAPE (selective 2'-hydroxyl acylation analyzed by primer extension)Exploiting post-transcriptional regulation to probe RNA structures in vivo via fluorescence.hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1.The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot.An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq.ITS2 Secondary Structure Improves Discrimination between Medicinal "Mu Tong" Species when Using DNA Barcoding.Targeting Highly Structured RNA by Cooperative Action of siRNAs and Helper Antisense Oligomers in Living Cells RNA Structures as Mediators of Neurological Diseases and as Drug Targets.Quantitative dimethyl sulfate mapping for automated RNA secondary structure inference.Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection.

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DMS footprinting of structured RNAs and RNA-protein complexes

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description

2007 nî lūn-bûn

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2007 թվականին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年论文

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DMS footprinting of structured RNAs and RNA-protein complexes

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DMS footprinting of structured RNAs and RNA-protein complexes

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DMS footprinting of structured RNAs and RNA-protein complexes

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DMS footprinting of structured RNAs and RNA-protein complexes

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DMS footprinting of structured RNAs and RNA-protein complexes

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DMS footprinting of structured RNAs and RNA-protein complexes

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DMS footprinting of structured RNAs and RNA-protein complexes

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DMS footprinting of structured RNAs and RNA-protein complexes

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DMS footprinting of structured RNAs and RNA-protein complexes

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DMS footprinting of structured RNAs and RNA-protein complexes

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Pilar Tijerina

http://www.w3.org/2001/XMLSchema#string

Rick Russell

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Sabine Mohr

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P2860

DNA sequencing with chain-terminating inhibitors

Protein-induced conformational changes of RNA during the assembly of human signal recognition particle

Exploring the folding landscape of a structured RNA

Structural organization of a viral IRES depends on the integrity of the GNRA motif.

Binding of the 60-kDa Ro autoantigen to Y RNAs: evidence for recognition in the major groove of a conserved helix.

Secondary structure models of the 3' untranslated regions of diverse R2 RNAs.

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

A new method for sequencing DNA

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

U5 small nuclear ribonucleoprotein: RNA structure analysis and ATP-dependent interaction with U4/U6

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4598948

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10.1038/NPROT.2007.380

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2701642

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