Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2 - Wikidata - awgldk - TriplyDB

Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2

Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2

http://www.wikidata.org/entity/Q24685579

about

Control of virulence by small RNAs in Streptococcus pneumoniae A genome-wide analysis of small regulatory RNAs in the human pathogen group A Streptococcus Regulation of Hfq by the RNA CrcZ in Pseudomonas aeruginosa carbon catabolite repression Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes Biocomputational prediction of small non-coding RNAs in Streptomyces Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021 Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays RNApredator: fast accessibility-based prediction of sRNA targets Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript sRNATarBase: a comprehensive database of bacterial sRNA targets verified by experiments A screen for non-coding RNA in Mycobacterium tuberculosis reveals a cAMP-responsive RNA that is expressed during infection Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris Small non-coding RNAs in Streptomyces coelicolor Identification of a sigma B-dependent small noncoding RNA in Listeria monocytogenes Identification of small RNAs in Mycobacterium tuberculosis Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics A novel fur- and iron-regulated small RNA, NrrF, is required for indirect fur-mediated regulation of the sdhA and sdhC genes in Neisseria meningitidis RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA Translational control and target recognition by Escherichia coli small RNAs in vivo Yersinia pestis and Yersinia pseudotuberculosis infection: a regulatory RNA perspective Transcriptome complexity and riboregulation in the human pathogen Helicobacter pylori Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011 The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal Genome-wide analyses of small non-coding RNAs in streptococci An integrated approach for finding overlooked genes in Shigella Identification of novel regulatory small RNAs in Acinetobacter baumannii Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat shock and oxidative stress response.The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing.Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032 The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs Genome diversity of Pseudomonas aeruginosa PAO1 laboratory strains.Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array.

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P2860

Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2

http://www.wikidata.org/entity/Q24685579

description

2006 nî lūn-bûn

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2006 թուականին հրատարակուած գիտական յօդուած

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2006年の論文

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Identification of 17 Pseudomon ...... ioinformatic tool sRNAPredict2

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Anja Brencic

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Jonathan Livny

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Matthew K Waldor

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Stephen Lory

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P2860

Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains.

sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Noncoding RNA gene detection using comparative sequence analysis

Rfam: annotating non-coding RNAs in complete genomes

Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis

Identification of novel small RNAs using comparative genomics and microarrays

Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene

A survey of small RNA-encoding genes in Escherichia coli

EcoCyc: a comprehensive database resource for Escherichia coli

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3484-93

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scholarly article

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10.1093/NAR/GKL453

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34

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6915172

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16870723

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Pseudomonas aeruginosa

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1524904

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